Basic Information

Insect: Nebria salina
Gene Symbol: -
Assembly: GCA_944039265.1
Location: CALUEJ010000124.1:373464-375657[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.001 0.1 14.0 0.2 1 23 138 160 138 160 0.96

2 16 6.6e-05 0.0064 17.7 0.5 1 23 165 187 165 187 0.97

3 16 0.0016 0.15 13.4 7.6 1 23 208 231 208 231 0.97

4 16 0.0019 0.19 13.1 1.7 2 23 249 271 248 271 0.97

5 16 7.5 7.3e+02 1.8 3.2 1 23 280 302 280 302 0.96

6 16 0.00079 0.077 14.3 3.0 1 23 314 336 314 336 0.99

7 16 0.022 2.1 9.8 1.5 1 20 349 368 349 371 0.95

8 16 1.4e-06 0.00013 23.0 0.7 1 23 392 416 392 416 0.99

9 16 4.1 4e+02 2.7 2.5 2 23 423 445 422 445 0.94

10 16 7e-06 0.00068 20.8 2.4 1 23 451 473 451 473 0.98

11 16 4.7e-05 0.0045 18.2 1.2 1 23 479 501 479 501 0.98

12 16 0.00015 0.015 16.6 0.4 1 23 507 529 507 529 0.98

13 16 1.8e-05 0.0018 19.5 1.3 1 23 535 557 535 557 0.98

14 16 0.0018 0.17 13.2 0.9 1 23 563 585 563 585 0.98

15 16 1.4e-07 1.3e-05 26.2 1.7 1 23 591 613 591 613 0.97

16 16 3.1e-06 0.0003 21.9 1.1 1 23 619 641 619 641 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.001	0.1	14.0	0.2	1	23	138	160	138	160	0.96
2	16	6.6e-05	0.0064	17.7	0.5	1	23	165	187	165	187	0.97
3	16	0.0016	0.15	13.4	7.6	1	23	208	231	208	231	0.97
4	16	0.0019	0.19	13.1	1.7	2	23	249	271	248	271	0.97
5	16	7.5	7.3e+02	1.8	3.2	1	23	280	302	280	302	0.96
6	16	0.00079	0.077	14.3	3.0	1	23	314	336	314	336	0.99
7	16	0.022	2.1	9.8	1.5	1	20	349	368	349	371	0.95
8	16	1.4e-06	0.00013	23.0	0.7	1	23	392	416	392	416	0.99
9	16	4.1	4e+02	2.7	2.5	2	23	423	445	422	445	0.94
10	16	7e-06	0.00068	20.8	2.4	1	23	451	473	451	473	0.98
11	16	4.7e-05	0.0045	18.2	1.2	1	23	479	501	479	501	0.98
12	16	0.00015	0.015	16.6	0.4	1	23	507	529	507	529	0.98
13	16	1.8e-05	0.0018	19.5	1.3	1	23	535	557	535	557	0.98
14	16	0.0018	0.17	13.2	0.9	1	23	563	585	563	585	0.98
15	16	1.4e-07	1.3e-05	26.2	1.7	1	23	591	613	591	613	0.97
16	16	3.1e-06	0.0003	21.9	1.1	1	23	619	641	619	641	0.98

Sequence Information

Coding Sequence: atgagTGAAGAACAGTGCCGGACGTGTTTGATAAAACCGGTGGATATGATATCGTTAACGGCTGATCACGTTGTATGTGATAAGGTTATGTCCGTGTTGGATTTGATTAAAATGTGTGCGTCCGTTGAGATCGAATTGGAAGATGGCTTTCCGCAGTTCGTGTGTGTTGACTGTATACATTTAGCGGAGAAGTCATTCGAATTTCGGCTCCAGTGCAAAGAAGCGGATGACACATTACGCGCTGGACCAGTCGTCCAATTCGACGTACTACAATTCGAAGCGGACGAAAGCGAAGAAGTTGAGGTGATTTGCGAGGAAATCGAACCGGAATGCGTGAAATTCGAATCGATACCGGACGACGAATACAACGAACAAGTTATTAAATGCGAAGAAATCGAAGTGGAAGAAACCTACCCGTGTAACATTTGCAATTTGATATTTCCGACGGAGAACGCGTTAGCGAAACACAGCCACATACACCCACCCAACTTCTATCAATGTCCACATTGTCCTGTTAGattTATATCCGAAACACTACTTGAGAAACACGTCGTGAAACACTTACAAAAAACCCCCGAACCTCAATTCAAACCAAACACAAAACGCCGCTTAACCATATGCTTCATGTGTTCCGATTGCGGTAAAAAATGCAACTCACTCGCCCActtacactcacacacccgCAAATACCACCCAGTCGTGCACAAACCCACCGAAACCGAACCTAACCCCACTTCACTCGTCAAATGCCACATATGTGACAGCTTATTCCACAGCAACGTCGATCTAGAAAACCATATGcaatccgtacatattttaaccAACAAACCCTCGAATTACCACTGTAAACTATGTTGCAAAACACTCCCAAACATACTCGCTTGGCGATCACATATGCAATCgcataaaaaacataaaacaaccTCAAACAACATTGcttataaatgcaaaatatgcaATTGCGATTTTAACACACTAACCGATATAAAAGAGCACTTAAACACCCACGCAATCGATGGTAAATCACTATTCCAACACTTATTATACAAGTGCACGGAGTGCACGAACAGTTTTGATTCGATTTACGAGTTTTTCCGTCACACCCCCGAGCACTCAGGGTCTAAAATCGAGAATACACAAACAGGCGCGACTAGACTCGTTAAAAAACGACCCTATAAGTGTTCATACGCGAATTGCGACAAGACGTTTCCGAGTCCCAGCGCGCTTAAAAACCATTCACGAACCCACCAATCAGCGTGGCCGAAAAAATGCCGCTACTGCGATGACGTATTACATAAATGGCATGATTACATGGCACACTTAAACGCGAAACACGAGCACgaaaaaacgtttatttgcTCGCAATGCGGTAAAAAGTTCTTCAAAGAACGCAACCTTACATCGCACATCAAAACGCACACGGGTGAACGTAATTATATGTGTGATTATTGCGGGTTTAGTTTTCACGCGCAGAATAACCTAGTTGCGCATCGGCGTATACATACCGGTGTGAAACCGTATAAGTGTACTTTGTGCCCGATGGCGTTTCCACAGCACGCTGGATTGCGTTCGCATTTATTAAACCATAGTGGTGAGAAGAAATTCGAGTGTCCGACTTGTCATAAGAAATTCTTGCGTCCTGGTGCGTTGAATACGCATATTAAAACGCATACGGGTGTTAAGGATTACGCGTGTCATTTGTGTGGGGCGAGGTTTGGGGCGTCGTCGACGCGGAAGAAGCATATTTTAACGCATACAGGGGAACGGAATCATGTGTGCGATTTTTGTGGTAAGGCGTTCAGTCGCAATTCGAATTTGAATGTGCATCGGAAGATACATACGGGTGAGACGCCGCATGTGTGCGAGATTTGCGGTAAGGGTTTCATACAGGCGCATGTGTTGCGTTCGCATATGAACACGCATCGGAAGTCGCGCGATGCGTTGAAGCGCGAGGCGAAGATTGCGAAACGGGATGTTGACGAGGAGGAATCGGAAGAGTTGACTGTTTTGGTTGATTTGGgcgattaa
Protein Sequence: MSEEQCRTCLIKPVDMISLTADHVVCDKVMSVLDLIKMCASVEIELEDGFPQFVCVDCIHLAEKSFEFRLQCKEADDTLRAGPVVQFDVLQFEADESEEVEVICEEIEPECVKFESIPDDEYNEQVIKCEEIEVEETYPCNICNLIFPTENALAKHSHIHPPNFYQCPHCPVRFISETLLEKHVVKHLQKTPEPQFKPNTKRRLTICFMCSDCGKKCNSLAHLHSHTRKYHPVVHKPTETEPNPTSLVKCHICDSLFHSNVDLENHMQSVHILTNKPSNYHCKLCCKTLPNILAWRSHMQSHKKHKTTSNNIAYKCKICNCDFNTLTDIKEHLNTHAIDGKSLFQHLLYKCTECTNSFDSIYEFFRHTPEHSGSKIENTQTGATRLVKKRPYKCSYANCDKTFPSPSALKNHSRTHQSAWPKKCRYCDDVLHKWHDYMAHLNAKHEHEKTFICSQCGKKFFKERNLTSHIKTHTGERNYMCDYCGFSFHAQNNLVAHRRIHTGVKPYKCTLCPMAFPQHAGLRSHLLNHSGEKKFECPTCHKKFLRPGALNTHIKTHTGVKDYACHLCGARFGASSTRKKHILTHTGERNHVCDFCGKAFSRNSNLNVHRKIHTGETPHVCEICGKGFIQAHVLRSHMNTHRKSRDALKREAKIAKRDVDEEESEELTVLVDLGD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01039483;
90% Identity: iTF_01039483;
80% Identity: -