Basic Information

Insect: Nebria salina
Gene Symbol: -
Assembly: GCA_944039265.1
Location: CALUEJ010000255.1:99913-103313[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0006 0.058 14.7 1.7 2 23 156 177 156 177 0.98

2 16 7.5e-06 0.00073 20.7 2.8 2 23 184 205 183 205 0.97

3 16 0.0016 0.16 13.4 3.5 1 23 214 236 214 236 0.97

4 16 0.00014 0.013 16.8 0.5 1 23 313 335 313 335 0.97

5 16 2.5e-05 0.0025 19.1 4.0 2 23 342 363 341 363 0.97

6 16 0.0036 0.35 12.3 1.7 3 23 389 410 387 410 0.94

7 16 0.00041 0.04 15.2 8.9 1 23 485 507 485 507 0.96

8 16 0.002 0.2 13.1 0.8 1 23 513 536 513 536 0.95

9 16 3.5e-06 0.00034 21.7 0.9 1 23 541 563 541 563 0.98

10 16 3.7e-06 0.00036 21.7 5.2 1 23 576 598 576 598 0.97

11 16 6.9e-07 6.7e-05 24.0 0.4 1 23 605 627 605 627 0.97

12 16 3.1e-05 0.003 18.8 1.6 3 23 639 659 637 659 0.92

13 16 0.00042 0.041 15.2 4.1 1 23 665 687 665 687 0.99

14 16 1.3e-05 0.0013 20.0 1.8 1 23 693 715 693 715 0.96

15 16 3.5e-07 3.4e-05 24.9 0.3 1 23 721 743 721 743 0.99

16 16 0.00025 0.025 15.9 0.1 1 23 749 773 749 773 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0006	0.058	14.7	1.7	2	23	156	177	156	177	0.98
2	16	7.5e-06	0.00073	20.7	2.8	2	23	184	205	183	205	0.97
3	16	0.0016	0.16	13.4	3.5	1	23	214	236	214	236	0.97
4	16	0.00014	0.013	16.8	0.5	1	23	313	335	313	335	0.97
5	16	2.5e-05	0.0025	19.1	4.0	2	23	342	363	341	363	0.97
6	16	0.0036	0.35	12.3	1.7	3	23	389	410	387	410	0.94
7	16	0.00041	0.04	15.2	8.9	1	23	485	507	485	507	0.96
8	16	0.002	0.2	13.1	0.8	1	23	513	536	513	536	0.95
9	16	3.5e-06	0.00034	21.7	0.9	1	23	541	563	541	563	0.98
10	16	3.7e-06	0.00036	21.7	5.2	1	23	576	598	576	598	0.97
11	16	6.9e-07	6.7e-05	24.0	0.4	1	23	605	627	605	627	0.97
12	16	3.1e-05	0.003	18.8	1.6	3	23	639	659	637	659	0.92
13	16	0.00042	0.041	15.2	4.1	1	23	665	687	665	687	0.99
14	16	1.3e-05	0.0013	20.0	1.8	1	23	693	715	693	715	0.96
15	16	3.5e-07	3.4e-05	24.9	0.3	1	23	721	743	721	743	0.99
16	16	0.00025	0.025	15.9	0.1	1	23	749	773	749	773	0.92

Sequence Information

Coding Sequence: ATGATTAACAAAGAAAATAGTTTGTGTCTGGACAAGATATGTCGGTCTTGTATGTTGGAGAACAAGGAAATGAGATCGGTTTATGAATCGAACACAGATGCGGTGCAGCTTGCTGAAATGATAATGGCTTGTGCATCAGTTCAGGTGGCATCCGGTGATGGATTACCCAATCTTATTTGTCCCAAATGCGAAGAACAGTTAAACATTGCCTACCTATTTAAACAGCAATGCGAACGAACTGATACGACTTTGAGAGAATACACAAATCAGGCATTGTCCAGTTCAATCAAAGAAGAATCCGAGTCGTTGGATATTGTTGTCAAACCGGATATTGACGTACTGGAAATTTACGACGAAGCTGACGATGGTCGAAATAACGACGATACGTTCGGTTCAGGTTCGGAGAGTGTTCACAGTAGTTATTCGGCAACAGTTGGCAGGAAAAAGAAATCTCCAAAAACACGACAGTGCCGATATTGTAATAAGATGCTCTCGACGAAGGAGGGCCTCAAACTGCACGAACGACGGCATACAGGTGAGAAATTGAAGACATGCCCAGTATGCAATACAACATTCACCAAATCCAATCACCTGATTCGACACATGCAACTCCATAATAAACCAACAGACGAGTACAAACACACATGCCAAGAGTGTGGTATGGGCTTCATGAAGGCTACGCATCTACTCAAACACAAACGCGAGCACAAGAAGACTACGGACAAGGATACATCCGGCAGTGCCAGTGGTGAACCGTCCCAAAGTCCCGAGGACGACGatgacgacgacgacgacgccgccgccgccgccgatgatgatgatgatgtgGTGGTGATGGCGCAAGTGAAGAACGAAGTAGACAGTGATGGCGCCGACGAGCAGCTCGACGACAACAGGCCCAAGCTGCGTCCCAAGAAGGAACCATCGAACGATCATCATCCTTGTAAGGTGTGCAATAAACTTCTTACTACAGCCGCTGGTCTCCAAATTCATATGCGGCGTCATACCGGCAAAAATCTCTCCACATGCTATATCTGTCTGAAATCGTTTACCAAAACAAGTCATCTGAATCGACACATGTTGACCCATGGCGTGACTCCCGTAAAGAATGCAGCCGTCGCGAAGGAGAAGACCACCGAAccaaaagagaaaaaatacCTGGCCTGTGAATTTTGTGATCGGAAATTCGTATACCGCAAAAGTTTCCTGCATCACATTCAGCTCGAACATCAAATATCCGAAGATAGTGATACGCCGCTCAGCGAATATGCAACCATTGTGGTTACTAAATCGAAAACATCAGACGAGAATGgTGCAAATGGAAACAAAGATGGCACCGGTGACAATGAACTACACGACAATGAGACGAATCCTAGCGGCAGCACGTTGCAAGGAGAACAGGATGACTTTGAGATGATGATGTTGGAACAGGACGAGGCGAAGAAAGTACAGCACGTGTGTCATGTGTGTAATCATAAATTCACGCGGGCCAATCATCTGACGCGACACATGACGCTGCACCGCGCGGTACTGCTGCACAAGTGCGATCGGTGCGAAAAGGCGTTCATGACTGCCGAGTACCTAGCGTCGCACGTGCAAGAGTACCACGTGGACCGGCCGTACGTGTGCTCTCTGTGCAACAAACCATTCAGTCGCGGCGAACATCTCATTCGTCATTTGAAAGTGCACGACAAAGACGCGCCCGCAGGTGGCAAGGATGACCAGCACAAGTGTTCCATCTGCGAGAAAACGTTCTCGCGTTCTGATCATTTGGCGCGACACACCAAGTTGCATCTCGCCCAGGACAAGCGGCACGTTTGCGGCGAGTGCGGCAAAGCGTTCAATCGCCTGGATAATCTGCGTACGCACGCGCGAATTCACACCGGAGTACGGGATCCACAAAGATTGCATTTATGCATTTATTGCGGCAAAGAGTTCAACAATTCAAGCAACATGATTGTACACATGCGACGGCACACCGGCGAACGGCCCTACAAATGTGCGCAATGCGGCAAAGGATTCCCGCGGTCGCATGACCTCAAATGCCACGAGCGCACACATTCAGGCGAAAAACCGTACTTGTGCACGCTGTGCGGTAAGTCATTCAACAAGAGCAATAAGTTGCTGCGCCATACCCGCGTGCATACCGGTGAACGGCCCTACGTGTGCTCGCTCTGTGGCCGCGCCTTCACCCAATCCAACGACCTGGCACTACACATGCGGCGGCATACTGGATCGCGACCGTACGCTTGCGGCATGTGCCCGGCCCGATTCATCCAGAGCGGGCAGCTAAAGGCACACAGGCGCTCGCAAGGCCACTGGCTGGAGACGCCGCCCGAATTGAAAGGCGCACATCGCGTCACTCCAGTCACGCCGCTTGTGAATCCGCCGCCCATTAAATTCAAGACGCGTGTGCAGCGTATTAAAGAAGAACCGACGATACTCGGCCATACCATTGGTCTTGGTGGTGCAGTCACTGCGGCTGCAGTTAAACAACAAGCAGCTACTAGCATCGTGATGGCTGATAATAGTAGTACTGGTGGACCTTCAGCAGCAGCGTCATTCGTTACTTTCGTGCACAAGTCTCCACAACAAAAcgaacagcagcagcaacaacaacaacaacaacagcagcagcagcaacaacaacaacaacaacaacagcagcagcagcaacaacaacaacaacaacaacaacaagtgCACAATTTCAGTGTGTCGAATTTGAGTAATCGTGATGCAATTGTCTTAAACACCGCTACTGGTGTTTCACACAGTACATCGCAGGCCAGTGGCGCCTCATCGTTTCAATCCAACGTAGAACCTAGCACCTCATTCGCAAACACATTCACCGTCAGTAGCGAGGGTTACACCTATCAGTCGTATGGTTAA
Protein Sequence: MINKENSLCLDKICRSCMLENKEMRSVYESNTDAVQLAEMIMACASVQVASGDGLPNLICPKCEEQLNIAYLFKQQCERTDTTLREYTNQALSSSIKEESESLDIVVKPDIDVLEIYDEADDGRNNDDTFGSGSESVHSSYSATVGRKKKSPKTRQCRYCNKMLSTKEGLKLHERRHTGEKLKTCPVCNTTFTKSNHLIRHMQLHNKPTDEYKHTCQECGMGFMKATHLLKHKREHKKTTDKDTSGSASGEPSQSPEDDDDDDDDAAAAADDDDDVVVMAQVKNEVDSDGADEQLDDNRPKLRPKKEPSNDHHPCKVCNKLLTTAAGLQIHMRRHTGKNLSTCYICLKSFTKTSHLNRHMLTHGVTPVKNAAVAKEKTTEPKEKKYLACEFCDRKFVYRKSFLHHIQLEHQISEDSDTPLSEYATIVVTKSKTSDENGANGNKDGTGDNELHDNETNPSGSTLQGEQDDFEMMMLEQDEAKKVQHVCHVCNHKFTRANHLTRHMTLHRAVLLHKCDRCEKAFMTAEYLASHVQEYHVDRPYVCSLCNKPFSRGEHLIRHLKVHDKDAPAGGKDDQHKCSICEKTFSRSDHLARHTKLHLAQDKRHVCGECGKAFNRLDNLRTHARIHTGVRDPQRLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCAQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCSLCGRAFTQSNDLALHMRRHTGSRPYACGMCPARFIQSGQLKAHRRSQGHWLETPPELKGAHRVTPVTPLVNPPPIKFKTRVQRIKEEPTILGHTIGLGGAVTAAAVKQQAATSIVMADNSSTGGPSAAASFVTFVHKSPQQNEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVHNFSVSNLSNRDAIVLNTATGVSHSTSQASGASSFQSNVEPSTSFANTFTVSSEGYTYQSYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01039454;
90% Identity: iTF_01039454;
80% Identity: -