Basic Information

Insect: Nebria brevicollis
Gene Symbol: -
Assembly: GCA_944739395.1
Location: CALYJC010000452.1:72453-75863[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00066 0.062 14.7 1.7 2 23 156 177 156 177 0.98

2 16 8.2e-06 0.00077 20.7 2.8 2 23 184 205 183 205 0.97

3 16 0.0018 0.17 13.3 3.5 1 23 214 236 214 236 0.97

4 16 0.00015 0.014 16.7 0.5 1 23 316 338 316 338 0.97

5 16 2.8e-05 0.0026 19.0 4.0 2 23 345 366 344 366 0.97

6 16 0.004 0.37 12.2 1.7 3 23 392 413 390 413 0.94

7 16 0.00046 0.042 15.2 8.9 1 23 488 510 488 510 0.96

8 16 0.0022 0.21 13.0 0.8 1 23 516 539 516 539 0.95

9 16 3.9e-06 0.00036 21.7 0.9 1 23 544 566 544 566 0.98

10 16 1.9e-06 0.00018 22.7 4.1 1 23 579 601 579 601 0.97

11 16 7.6e-07 7.1e-05 23.9 0.4 1 23 608 630 608 630 0.97

12 16 3.4e-05 0.0032 18.7 1.6 3 23 642 662 640 662 0.92

13 16 0.00047 0.043 15.2 4.1 1 23 668 690 668 690 0.99

14 16 1.4e-05 0.0013 19.9 1.8 1 23 696 718 696 718 0.96

15 16 3.9e-07 3.6e-05 24.9 0.3 1 23 724 746 724 746 0.99

16 16 0.00028 0.026 15.9 0.1 1 23 752 776 752 776 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00066	0.062	14.7	1.7	2	23	156	177	156	177	0.98
2	16	8.2e-06	0.00077	20.7	2.8	2	23	184	205	183	205	0.97
3	16	0.0018	0.17	13.3	3.5	1	23	214	236	214	236	0.97
4	16	0.00015	0.014	16.7	0.5	1	23	316	338	316	338	0.97
5	16	2.8e-05	0.0026	19.0	4.0	2	23	345	366	344	366	0.97
6	16	0.004	0.37	12.2	1.7	3	23	392	413	390	413	0.94
7	16	0.00046	0.042	15.2	8.9	1	23	488	510	488	510	0.96
8	16	0.0022	0.21	13.0	0.8	1	23	516	539	516	539	0.95
9	16	3.9e-06	0.00036	21.7	0.9	1	23	544	566	544	566	0.98
10	16	1.9e-06	0.00018	22.7	4.1	1	23	579	601	579	601	0.97
11	16	7.6e-07	7.1e-05	23.9	0.4	1	23	608	630	608	630	0.97
12	16	3.4e-05	0.0032	18.7	1.6	3	23	642	662	640	662	0.92
13	16	0.00047	0.043	15.2	4.1	1	23	668	690	668	690	0.99
14	16	1.4e-05	0.0013	19.9	1.8	1	23	696	718	696	718	0.96
15	16	3.9e-07	3.6e-05	24.9	0.3	1	23	724	746	724	746	0.99
16	16	0.00028	0.026	15.9	0.1	1	23	752	776	752	776	0.92

Sequence Information

Coding Sequence: ATGATTAACAAAGATAATAGTTTGTGTCTGGACAAGATATGTCGGTCTTGTATGTTGGAGAACAAGGAAATGAGATCGGTTTATGAATCGAACACAGATGCGGTGCAGCTTGCTGAAATGATAATGGCTTGTGCATCAGTTCAGGTGGCATCCGGTGATGGATTGCCCAATCTTATTTGTCCCAAATGCGAAGAACAGTTAAACATTGCCTACCTATTTAAACAGCAATGCGAACGAACTGATACGACTTTGAGAGAATACACAAATCAGGCATTGTCCAGTTCAATCAAAGAAGAATCCGAGTCGTTGGATATTGTTGTCAAACCGGATATTGACGTACTGGAAATTTACGACGAAGCTGACGATGGTCGAAATAACGACGATACGTTCGGTTCAGGTTCGGAGAGTGTTCACAGTAGTTATTCGGCAACAGTTGGCAGGAAAAAGAAATCTCCAAAAACACGACAGTGCAGATATTGTAATAAGATGCTCTCGACGAAGGAGGGCCTCAAACTCCACGAACGACGGCATACAGGTGAGAAATTGAAGACATGCCCAGTATGCAATACAACATTCACCAAATCCAATCATCTGATTCGACACATGCAACTCCATAACAAACCAACAGACGAGTACAAGCACACATGCCAAGAGTGTGGTATGGGCTTCATGAAGGCTACGCATCTACTCAAACACAAACGCGAGCACAAGAAGACTACGGACAAGGATACATCCGGCAGTGCCAGTGGTGAACCGTCCCAAAGTCCCGAGGACGACGACGACGATGATGAGGATGTCGTCAATGCAGACGCCGAtcatgatgatgatggtgatGTGGTGGTGATGGCGCAAGTGAAGAACGAAGTAGACAGTGATGGCGCAGGCGAGCAGCTCGACGACAACAGGCCCAAGCTGCGCCCCAAGAAGGAACCATCGAACGATCATCATCCTTGTAAGGTGTGCAATAAACTTCTTACTACAGCCGCTGGTCTCCAAATTCATATGCGGCGTCATACCGGCAAAAATCTCTCCACATGCTATATCTGTCTGAAATCGTTTACCAAAACAAGTCATCTGAATCGACACATGTTGACCCATGGCGTGACTCCCGTAAAGAATGCAGCCGTCGCGAAGGAGAAGACCACCGAACcaaaagagaaaaaataccTGGCCTGTGAATTTTGTGATCGGAAATTCGTATACCGCAAAAGTTTCCTGCATCACATTCAGCTCGAACATCAAATATCCGAAGATAGTGATACGCCGCTCAGCGAATATGCAACCATTGTTGTTACTAAATCGAAAACATCAGACGAGAATGgTGCAAATGGAAACAAAGATGGCACCGGTGACAATGAACTACACGACAATGAGACGAATCCTAGCGGCAGCACGTTGCAAGGAGAACAGGATGACTTTGAGATGATGATGTTGGAACAGGACGAGGCGAAGAAAGTACAGCACGTGTGTCATGTGTGTAATCATAAATTCACGCGGGCCAATCATCTGACGCGACACATGACGCTGCACCGCGCGGTACTGCTGCACAAGTGCGATCGGTGCGAAAAGGCGTTCATGACTGCCGAGTACCTAGCGTCGCACGTGCAAGAGTACCACGTGGACCGGCCGTACGTGTGCTCTCTGTGCAACAAACCATTCAGTCGCGGCGAACATCTTATTCGTCATTTGAAAGTGCACGACAAAGACGCGCCCGCCGGTGGCAAAGATGACCAACACAAGTGTTCCATCTGCGAGAAAACGTTCTCGCGTCCTGATCATTTGGCGCGGCACACCAAGTTGCATCTCGCCCAGGACAAGCGGCACGTTTGCGGCGAGTGCGGCAAAGCGTTCAATCGCCTGGATAATTTGCGTACGCACGCGCGAATTCACACCGGAGTACGGGATCCACAAAGATTGCATTTATGCATTTATTGCGGCAAAGAGTTCAACAATTCGAGCAACATGATTGTACACATGCGACGGCACACCGGCGAACGGCCTTACAAATGTGCGCAGTGCGGCAAAGGATTCCCGCGGTCGCATGACCTCAAATGCCACGAGCGCACACATTCAGGCGAAAAACCGTACTTGTGCACGCTGTGCGGTAAGTCATTCAACAAGAGCAATAAGTTGCTGCGCCATACCCGCGTGCATACCGGTGAACGGCCCTACGTGTGCTCGCTGTGCGGCCGCGCCTTCACCCAGTCCAACGACCTGGCACTACACATGCGGCGGCATACTGGATCGCGGCCGTACGCTTGCGGCATGTGCCCGGCCCGATTCATCCAAAGCGGGCAGCTAAAGGCACACAGGCGCTCGCAAGGCCACTGGCTGGAGACGCCGCCCGAATTGAAAGGCGCACATCGCGTCACTCCAGTCACGCCGCTTGTGAATCCGCCGCCGATTAAATTCAAGACTCGTGTGCAGCGTATTAAAGAGGAACCGACGATACTCGGTCATACCATTGGTCTTGGTGGTGCAGTCACTGCGGCTGCTGTTGCAGTTAAACAACAAGCAGCTACTAGCATCGTGATGGCTGATAATAGTAGTACTGGTGGACCTTCAGCAGCAGCGTCATTCGTTGCTTTCGTGCACAAGTCTCCACAACAAAacgaacagcagcagcagcaacaacaacagcagcaacaacaacaacaacaacaacaacaacaacagcagcagcaacaacaacagcagcagcagcagcagcagcagcaacaacaacaacagcagcagcaacaacaacaacaacaacaagtgCACAATTTCAGTGTGTCGAATTTGAGTAATCGTGATGCAATTGTCTTAAACACCGCTACTGGTGTTTCACACATGACCACCGGTGATCACAGTACATCGCAGGCCAGTGGCGCCTCATCGTTTCAATCCAACGTAGAACCTAGCACCTCATTCGCAAACACATTCACCGTCAGTAGCGAGGGTTACACCTATCAGTCGTATGGTTAA
Protein Sequence: MINKDNSLCLDKICRSCMLENKEMRSVYESNTDAVQLAEMIMACASVQVASGDGLPNLICPKCEEQLNIAYLFKQQCERTDTTLREYTNQALSSSIKEESESLDIVVKPDIDVLEIYDEADDGRNNDDTFGSGSESVHSSYSATVGRKKKSPKTRQCRYCNKMLSTKEGLKLHERRHTGEKLKTCPVCNTTFTKSNHLIRHMQLHNKPTDEYKHTCQECGMGFMKATHLLKHKREHKKTTDKDTSGSASGEPSQSPEDDDDDDEDVVNADADHDDDGDVVVMAQVKNEVDSDGAGEQLDDNRPKLRPKKEPSNDHHPCKVCNKLLTTAAGLQIHMRRHTGKNLSTCYICLKSFTKTSHLNRHMLTHGVTPVKNAAVAKEKTTEPKEKKYLACEFCDRKFVYRKSFLHHIQLEHQISEDSDTPLSEYATIVVTKSKTSDENGANGNKDGTGDNELHDNETNPSGSTLQGEQDDFEMMMLEQDEAKKVQHVCHVCNHKFTRANHLTRHMTLHRAVLLHKCDRCEKAFMTAEYLASHVQEYHVDRPYVCSLCNKPFSRGEHLIRHLKVHDKDAPAGGKDDQHKCSICEKTFSRPDHLARHTKLHLAQDKRHVCGECGKAFNRLDNLRTHARIHTGVRDPQRLHLCIYCGKEFNNSSNMIVHMRRHTGERPYKCAQCGKGFPRSHDLKCHERTHSGEKPYLCTLCGKSFNKSNKLLRHTRVHTGERPYVCSLCGRAFTQSNDLALHMRRHTGSRPYACGMCPARFIQSGQLKAHRRSQGHWLETPPELKGAHRVTPVTPLVNPPPIKFKTRVQRIKEEPTILGHTIGLGGAVTAAAVAVKQQAATSIVMADNSSTGGPSAAASFVAFVHKSPQQNEQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQVHNFSVSNLSNRDAIVLNTATGVSHMTTGDHSTSQASGASSFQSNVEPSTSFANTFTVSSEGYTYQSYG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01041090;
90% Identity: iTF_01041090;
80% Identity: -