Basic Information

Insect: Nebria salina
Gene Symbol: -
Assembly: GCA_944039265.1
Location: CALUEJ010000040.1:2263001-2266433[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.4e-05 0.0023 19.1 1.5 1 23 473 495 473 495 0.97

2 18 0.013 1.3 10.5 3.3 1 20 501 520 501 523 0.93

3 18 1.7e-05 0.0016 19.6 0.5 1 23 529 551 529 551 0.99

4 18 3.5e-05 0.0034 18.6 3.5 1 21 557 577 557 579 0.94

5 18 3.6e-05 0.0035 18.6 4.6 1 23 585 607 585 607 0.99

6 18 3.4e-05 0.0033 18.6 5.3 1 23 613 635 613 635 0.97

7 18 2.8e-05 0.0027 18.9 8.1 1 23 641 663 641 663 0.97

8 18 1.3e-07 1.3e-05 26.2 2.7 1 23 669 691 669 691 0.98

9 18 9.9e-05 0.0096 17.2 6.7 1 23 697 719 697 719 0.97

10 18 1.7e-05 0.0016 19.6 6.9 1 23 725 747 725 747 0.98

11 18 6.4e-07 6.2e-05 24.1 2.8 1 23 753 775 753 775 0.98

12 18 9e-06 0.00087 20.5 7.9 1 23 781 803 781 803 0.98

13 18 3.8e-05 0.0037 18.5 9.1 1 23 809 831 809 831 0.98

14 18 2.3e-05 0.0022 19.2 7.7 1 23 837 859 837 859 0.98

15 18 0.0014 0.14 13.5 8.8 1 21 865 885 865 887 0.94

16 18 0.00011 0.011 17.0 0.5 1 23 893 915 893 915 0.97

17 18 0.044 4.3 8.9 4.5 1 23 925 947 925 947 0.98

18 18 9.5e-07 9.2e-05 23.5 0.9 1 23 953 975 953 975 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.4e-05	0.0023	19.1	1.5	1	23	473	495	473	495	0.97
2	18	0.013	1.3	10.5	3.3	1	20	501	520	501	523	0.93
3	18	1.7e-05	0.0016	19.6	0.5	1	23	529	551	529	551	0.99
4	18	3.5e-05	0.0034	18.6	3.5	1	21	557	577	557	579	0.94
5	18	3.6e-05	0.0035	18.6	4.6	1	23	585	607	585	607	0.99
6	18	3.4e-05	0.0033	18.6	5.3	1	23	613	635	613	635	0.97
7	18	2.8e-05	0.0027	18.9	8.1	1	23	641	663	641	663	0.97
8	18	1.3e-07	1.3e-05	26.2	2.7	1	23	669	691	669	691	0.98
9	18	9.9e-05	0.0096	17.2	6.7	1	23	697	719	697	719	0.97
10	18	1.7e-05	0.0016	19.6	6.9	1	23	725	747	725	747	0.98
11	18	6.4e-07	6.2e-05	24.1	2.8	1	23	753	775	753	775	0.98
12	18	9e-06	0.00087	20.5	7.9	1	23	781	803	781	803	0.98
13	18	3.8e-05	0.0037	18.5	9.1	1	23	809	831	809	831	0.98
14	18	2.3e-05	0.0022	19.2	7.7	1	23	837	859	837	859	0.98
15	18	0.0014	0.14	13.5	8.8	1	21	865	885	865	887	0.94
16	18	0.00011	0.011	17.0	0.5	1	23	893	915	893	915	0.97
17	18	0.044	4.3	8.9	4.5	1	23	925	947	925	947	0.98
18	18	9.5e-07	9.2e-05	23.5	0.9	1	23	953	975	953	975	0.96

Sequence Information

Coding Sequence: atgaattcTGGTGACCAACATAATATGGCCACAACGGCTGGGGCGCAATCACAACCGGGATCATCAGCAGAAGATGGTGGCCAGCGAACATCTGTCCAACAGGTACAACAGCCGACGACGACAGTGCCAACCGATTTGCGTGTGAATACCGCATTAAATGCCGTTGCACTTAGCAGTGTGGCAAAATACTGGGTGCTCACGAACCTGCTACCAGGACCGATTCCGCAGGTATCGGTGTATGGGCTACCGGGAGCAACCAGAAACGACAACACAGGGAAACCAACACAGGAGGGTTTGCTTGGGCAGCACGGCGGTCTTCTGCCCTCTGATCCCATGTTGTTACAGCATAACTCGCAGATACCAGTGAGTATATCGACGCCGCAGGGTGTTGCGAACATATCAATTCCCGCGAATGCCATGCAGCACATGGATAATCggcaacaaaatcaaaatcagGTACAGTCCGGTAATGGCGATGGCCAAGCTGGAGCACAAATGGGCCATGCACAGCAACAAATGAATGCTCAAACAGGCCAAACCCACACAGCAAACACTGGACAAAATATCGTCCAGGTACAGGTGCAGGATAATATGGTTTCAGTTATAGATGATGCCAAAGATCAAATTAAATCAGAAATGTTAAATAaccaacagcagcagcaacaacaacagcagcagcagcaacaacaacagcaacaacaacaacaacagcagcaacaacaacagcagcagcaacaacaacaacaacagcagcaatgTACCCAAGAGCAAATGCAACAACAGATGAATGCTGCAGAAAACCAACAAATGGTGCAGCAACAAAATCTAACAGTTCAACAGTTGCAACATTTGCAAGTACAACAGGTTATTGATAATGTTGTACGAATGGAAAGCTCTGTTGATAATAATCAAGAAGGTAACCAAAACGATGGAACCATGCCTGATAACCTGCAGATAGTCAAAGATGAGAAAGGTATCCaaaattgtgcaaaattaTTATCGACTGCACAATTTGGCCTGCAGGATATTAAAGGCAATTTCACAATGCCCGACCTTAAAAGTGGCCATCACATGATGGATGTCCGGACTGCTGATGGAAGCATTGTAAAAATATCAGCTGGGATACAGGAACAGGATTTAGCAAAAACACTCGGCGTGGAAATGGTACAGAACATGTACAAAGTGAATGTCGACGATATCAATCAGTTACTCGCATACCACGAAGTATTCggtaaattacaaaatgaaatacaaGGTCAACAACAGACAGCTGCGGTGACGCCGAATACGACAACGAACACGGTGGTGCCCAACACGAACATgacaaatatcacaaaaacgCTGGAGAGCGACCAGGAACCATCAACGAGCTCAATATCGGCGGACAGTCCGCCGGCGGTTATTGCGGCTGGCACGCACGTGTGCGATCTGTGTGGTAAGATGTTCCCGTTCCGCTATCAATTGATCGTGCATCGGCGTTATCACACTGAGCGCAAGCCGTTCACGTGTCAGGTCTGTGGTAAGGCCTTCACGTGCGCTGCAGAGCTAACACGTCATGGCAAGTGTCATCTGGGCGGCAGCATGTATACATGTGCTGTTTGCTTTCATGTATTTGCAGACGCGGCATCTCTGGAGCGCCATATGAAGAGACACTCTACTGACAAACCGTACGCGTGTAACATTTGTGGTAAGTCCTTTGCACGGAAAGAACATCTTGACAACCATACCAGATGCCACACGGGCGAGACACCGTACCGCTGCCAGTATTGCGCGAAAACGTTCACGCGCAAAGAGCACATGGTCAACCACGTTCGCAAGCACACCGGCGAAACACCGCATCGTTGTGAGATTTGCAAAAAGTCGTTCACCCGCAAAGAGCATTTCATGAACCACGTCATGTGGCACACCGGCGAGACTCCTCACCATTGCACTACCTGTGGTAAGAAATACACGCGAAAAGAGCATTTGGCGAATCACATGCGTTCGCATACCAATGATACACCCTTCCGGTGTGAAATATGCGGCAAGTCGTTCACGCGCAAGGAACACTTTACGAACCACATCATGTGGCACACTGGTGAAACACCGCATCGCTGTGACTTTTGCTCGAAAACATTCACGCGCAAAGAGCATCTGCTGAACCATGTCCGGCAACATACTGGCGAATCACCGCATCGCTGTACGTTCTGTTCCAAATCGTTTACGCGTAAGGAACATTTGATAAATCATATACGACAGCACACGGGCGAAACGCCGTTCCGCTGCAGCTATTGTCCAAAAGCTTTCACACGCAAAGATCATTTGGTGAACCATGTACGACAACACACCGGCGAATCGCCGCACAAGTGCACATACTGCACGAAATCATTTACCAGAAAGGAACACCTGACCAATCATGTTAGGCAACACACGGGTGAATCCCCGCATCGTTGTCACTTTTGCTCGAAATCCTTCACGCGCAAAGAGCATCTAACTAACCACGTACGAATACACACCGGCGAATCGCCGCATCGGTGTGAATTCTGTCAGAAAACGTTCACTCGAAAAGAGCACCTGACCAATCATTTACGTCAGCACACCGGCGAAACGCCGCATTGTTGTAACGTTTGCTCGAAACCGTTCACAAGAAAAGAGCATCTAATAAACCATATGCGATGCCACACGGGCGAACGTCCGTTCGCATGCACGGAATGCGGGAAATCATTCCCATTGAAAGGAAATTTACTATTTCATCAACGTTCCCATAATAAGGGTTCAAATGCTGAGCGACCGTTCCGTTGCGACTTGTGTCCCAAAGATTTCATGTGCAAAGGGCATTTGGTATCGCATCGTCGGTCACATAGCGGGGAACGACCGCACGCTTGTCCGGATTGCGGCAAGACGTTCGTTGAGAAAGGTAATATGTTGCGGCATTTGCGGAAACATACGAGTGATACGGCCGCTCAGGCAGCGGCGGCTGCTGCGGTTGCACAAGGGAATGGCACCGTGGTGGCGCAACCATCTACTAGTAATATTCAAATACCGCAGATTAGTCAAGCACAGGTGATGCCTCCGCCTGCCACTACTGGTATGTTAGTTGGACAGGCACAGCATTTGCCTATTCACCAGCAACCGAGCCATCCCGTCGTTGTTCCTACGGCCAACGGTAATGTTTTAGCTACATATTAA
Protein Sequence: MNSGDQHNMATTAGAQSQPGSSAEDGGQRTSVQQVQQPTTTVPTDLRVNTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGATRNDNTGKPTQEGLLGQHGGLLPSDPMLLQHNSQIPVSISTPQGVANISIPANAMQHMDNRQQNQNQVQSGNGDGQAGAQMGHAQQQMNAQTGQTHTANTGQNIVQVQVQDNMVSVIDDAKDQIKSEMLNNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCTQEQMQQQMNAAENQQMVQQQNLTVQQLQHLQVQQVIDNVVRMESSVDNNQEGNQNDGTMPDNLQIVKDEKGIQNCAKLLSTAQFGLQDIKGNFTMPDLKSGHHMMDVRTADGSIVKISAGIQEQDLAKTLGVEMVQNMYKVNVDDINQLLAYHEVFGKLQNEIQGQQQTAAVTPNTTTNTVVPNTNMTNITKTLESDQEPSTSSISADSPPAVIAAGTHVCDLCGKMFPFRYQLIVHRRYHTERKPFTCQVCGKAFTCAAELTRHGKCHLGGSMYTCAVCFHVFADAASLERHMKRHSTDKPYACNICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTTCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTFCSKSFTRKEHLINHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRCHTGERPFACTECGKSFPLKGNLLFHQRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSGERPHACPDCGKTFVEKGNMLRHLRKHTSDTAAQAAAAAAVAQGNGTVVAQPSTSNIQIPQISQAQVMPPPATTGMLVGQAQHLPIHQQPSHPVVVPTANGNVLATY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00903477;
90% Identity: iTF_01039449;
80% Identity: -