Basic Information

Insect: Nebria brevicollis
Gene Symbol: -
Assembly: GCA_944739395.1
Location: CALYJC010000405.1:369664-373097[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.5e-05 0.0024 19.1 1.5 1 23 472 494 472 494 0.97

2 18 0.014 1.3 10.5 3.3 1 20 500 519 500 522 0.93

3 18 1.8e-05 0.0017 19.6 0.5 1 23 528 550 528 550 0.99

4 18 3.7e-05 0.0035 18.6 3.5 1 21 556 576 556 578 0.94

5 18 3.9e-05 0.0036 18.6 4.6 1 23 584 606 584 606 0.99

6 18 3.7e-05 0.0034 18.6 5.3 1 23 612 634 612 634 0.97

7 18 3e-05 0.0028 18.9 8.1 1 23 640 662 640 662 0.97

8 18 1.4e-07 1.3e-05 26.2 2.7 1 23 668 690 668 690 0.98

9 18 0.00011 0.0099 17.2 6.7 1 23 696 718 696 718 0.97

10 18 1.8e-05 0.0016 19.6 6.9 1 23 724 746 724 746 0.98

11 18 6.8e-07 6.3e-05 24.1 2.8 1 23 752 774 752 774 0.98

12 18 9.6e-06 0.00089 20.5 7.9 1 23 780 802 780 802 0.98

13 18 4.1e-05 0.0038 18.5 9.1 1 23 808 830 808 830 0.98

14 18 2.5e-05 0.0023 19.2 7.7 1 23 836 858 836 858 0.98

15 18 0.0015 0.14 13.6 8.8 1 21 864 884 864 886 0.94

16 18 0.00012 0.011 17.0 0.5 1 23 892 914 892 914 0.97

17 18 0.047 4.4 8.9 4.5 1 23 924 946 924 946 0.98

18 18 1e-06 9.5e-05 23.5 0.9 1 23 952 974 952 974 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.5e-05	0.0024	19.1	1.5	1	23	472	494	472	494	0.97
2	18	0.014	1.3	10.5	3.3	1	20	500	519	500	522	0.93
3	18	1.8e-05	0.0017	19.6	0.5	1	23	528	550	528	550	0.99
4	18	3.7e-05	0.0035	18.6	3.5	1	21	556	576	556	578	0.94
5	18	3.9e-05	0.0036	18.6	4.6	1	23	584	606	584	606	0.99
6	18	3.7e-05	0.0034	18.6	5.3	1	23	612	634	612	634	0.97
7	18	3e-05	0.0028	18.9	8.1	1	23	640	662	640	662	0.97
8	18	1.4e-07	1.3e-05	26.2	2.7	1	23	668	690	668	690	0.98
9	18	0.00011	0.0099	17.2	6.7	1	23	696	718	696	718	0.97
10	18	1.8e-05	0.0016	19.6	6.9	1	23	724	746	724	746	0.98
11	18	6.8e-07	6.3e-05	24.1	2.8	1	23	752	774	752	774	0.98
12	18	9.6e-06	0.00089	20.5	7.9	1	23	780	802	780	802	0.98
13	18	4.1e-05	0.0038	18.5	9.1	1	23	808	830	808	830	0.98
14	18	2.5e-05	0.0023	19.2	7.7	1	23	836	858	836	858	0.98
15	18	0.0015	0.14	13.6	8.8	1	21	864	884	864	886	0.94
16	18	0.00012	0.011	17.0	0.5	1	23	892	914	892	914	0.97
17	18	0.047	4.4	8.9	4.5	1	23	924	946	924	946	0.98
18	18	1e-06	9.5e-05	23.5	0.9	1	23	952	974	952	974	0.96

Sequence Information

Coding Sequence: atgaattCTGGTGACCAACATAATTTGGCCCCAACGGCTGGGGCACAATCACAACCGGGATCATCAGCAGAAGATGGTGGCCAGCGAACATCTGTTCAACAGGTACAACAGCCGACGACGACAGTGCCAACCGATTTGCGTGTGAATACCGCATTAAATGCCGTTGCACTTAGCAGTGTGGCGAAATACTGGGTGCTCACGAACCTGCTACCAGGACCGATTCCGCAGGTATCGGTGTATGGGCTACCGGGAGCAACCAGGAACGACAACACAGGGAAACCAACACAGGAGGGTTTGCTTGGGCAGCACGGCGGTCTTCTGCCCTCTGATCCCATGTTATTGCAGCATAACTCGCAGATACCAGTGAGTATATCGACGCCGCAGGGTGTTGCGAACATATCAATACCGGCGAATGCTATGCAGCACATGGATAATCGgcaacaaaatcaaaatcaGGTACAGTCCGGTAATGGCGATGGCCAAGCTGGAGCACAAATGGGCCATGCACAGCAACAAATGAATGCTCAAACAGGCCAAACACACACAGCAAACACTGGACAAAATATCGTCCAAGTACAGGTGCAGGATAATATGGTTTCAGTTATAGATGATGCCAAAGATCAAATTAAATCAGAAATGTTAAATAaccaacagcagcagcaacaacaacaacaacaacagcagcagcagcaacaacagcaacaacagcagcagcaacaacagcagcagcaacaacaacaacagcagcagcaatgTACTCAAGAGCAAATGCAACAACAGATGAATGCTGCAGAAAACCAACAAATGGTGCAGCAACAAAATCTAACAGTTCAACAGTTGCAACATTTACAAGTACAACAGGTCATTGATAATGTTGTACGAATGGAAAGCTCTGTTGATAATAATCAAGAAGGTAACCAAAACGATGGAACAATGCCCGATAACCTGCAGATAGTCAAAGATGAGAAAGGTATCCaaaattgtgcaaaattaTTATCGACTGCACAATTTGGCCTGCAGGATATTAAAGGCAATTTCACAATGCCTGACCTTAAAAGTGGCCATCACATGATGGATGTCCGGACTGCTGACGGAAGCATAGTAAAAATATCAGCTGGGATACAAGAGCAGGATTTAGCAAAAACACTCGGCGTGGAAATGGTACAGAACATGTACAAAGTGAATGTCGACGATATCAATCAGTTACTCGCATACCACGAAGTATTCggtaaattacaaaatgaaatacaaGGTCAACAACAAACAGCTGCGGTGACGCCAAATACGACAACGAACACGGTGGTGCCCAACACGAACAtgacaaatatcacaaaaacgCTGGAGAGCGATCAGGAACCATCAACGAGTTCAATATCGGCGGACAGTCCGCCGGCGGTTATTGCGGCTGGCACGCACGTGTGCGATCTGTGTGGTAAGATGTTCCCGTTCCGCTATCAATTAATCGTGCATCGGCGTTATCACACTGAGCGCAAGCCGTTCACGTGTCAGGTCTGTGGTAAGGCCTTCACGTGCGCTGCAGAGCTAACACGTCATGGCAAGTGTCATCTGGGCGGCAGCATGTATACATGTGCTGTTTGCTTTCATGTATTTGCAGACGCGGCATCTCTGGAGCGCCATATGAAGCGACACTCTACTGACAAACCGTACGCGTGTAACATTTGTGGTAAGTCCTTTGCACGGAAAGAACATCTTGACAACCATACCAGATGCCACACGGGCGAGACACCGTACCGCTGTCAGTATTGCGCGAAAACGTTCACGCGCAAAGAGCACATGGTCAATCACGTTCGCAAGCACACCGGCGAAACACCGCATCGTTGTGAAATTTGCAAAAAGTCGTTCACCCGCAAAGAGCATTTCATGAACCACGTCATGTGGCACACCGGCGAGACTCCTCACCATTGCACTACCTGTGGTAAGAAATACACGCGAAAAGAGCATTTGGCGAATCACATGCGTTCGCATACCAATGATACACCCTTCCGGTGTGAAATATGCGGCAAGTCGTTCACGCGCAAGGAACACTTTACGAACCACATCATGTGGCACACTGGTGAAACACCGCATCGCTGTGACTTTTGCTCGAAAACATTCACGCGCAAAGAGCATCTGCTGAACCATGTCCGGCAACATACCGGCGAATCACCGCATCGCTGTACGTTCTGTTCCAAATCGTTTACGCGCAAGGAACATTTGATAAATCATATACGACAGCATACGGGCGAAACGCCGTTCCGCTGTAGCTATTGTCCGAAAGCTTTCACACGCAAAGATCATTTGGTGAACCATGTACGACAACACACCGGCGAATCGCCGCACAAGTGCACATACTGCACGAAATCGTTTACCAGAAAGGAACACCTGACCAATCATGTTAGGCAGCACACGGGTGAATCCCCGCATCGTTGTCACTTTTGCTCGAAATCCTTCACGCGCAAAGAGCATCTAACCAACCACGTACGAATACACACCGGCGAATCGCCGCATCGGTGTGAATTCTGTCAGAAAACGTTCACACGAAAAGAGCACCTGACCAATCATTTACGTCAGCACACCGGCGAAACGCCGCATTGTTGTAACGTTTGCTCGAAACCGTTCACAAGAAAAGAGCATCTAATAAACCATATGCGATGCCATACGGGCGAACGTCCGTTCGCATGCACCGAATGCGGGAAATCATTCCCATTGAAAGGAAACTTACTATTCCATCAACGTTCCCATAATAAGGGTTCAAACGCTGAGCGACCGTTCCGTTGCGACTTGTGTCCCAAAGATTTCATGTGCAAAGGGCATTtggtgtcgcatcgtcggtcaCATAGCGGGGAACGACCGCACGCTTGTCCGGATTGCGGCAAGACGTTCGTTGAGAAAGGAAATATGTTGCGGCATTTGCGGAAACATACGAGTGATACTGCCGCCCAGGCAGCGGCTGCTGCTGCAGCTGCACAAGGGAATGGAACCGTGGTGGCGCAACCATCTACTAGTAATATTCAAATACCGCAGATTAGTCAAGCACAGGTGATGCCGCCGCCTGCCACTACTGGTATGTTAGTTGGACAGGCACAGCATTTGCCTATTCACCAGCAACCGAGCCATCCCGTCGTTGTTCCTACGGCCAACGGAAATGTTTTAGCTACATATTAA
Protein Sequence: MNSGDQHNLAPTAGAQSQPGSSAEDGGQRTSVQQVQQPTTTVPTDLRVNTALNAVALSSVAKYWVLTNLLPGPIPQVSVYGLPGATRNDNTGKPTQEGLLGQHGGLLPSDPMLLQHNSQIPVSISTPQGVANISIPANAMQHMDNRQQNQNQVQSGNGDGQAGAQMGHAQQQMNAQTGQTHTANTGQNIVQVQVQDNMVSVIDDAKDQIKSEMLNNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQCTQEQMQQQMNAAENQQMVQQQNLTVQQLQHLQVQQVIDNVVRMESSVDNNQEGNQNDGTMPDNLQIVKDEKGIQNCAKLLSTAQFGLQDIKGNFTMPDLKSGHHMMDVRTADGSIVKISAGIQEQDLAKTLGVEMVQNMYKVNVDDINQLLAYHEVFGKLQNEIQGQQQTAAVTPNTTTNTVVPNTNMTNITKTLESDQEPSTSSISADSPPAVIAAGTHVCDLCGKMFPFRYQLIVHRRYHTERKPFTCQVCGKAFTCAAELTRHGKCHLGGSMYTCAVCFHVFADAASLERHMKRHSTDKPYACNICGKSFARKEHLDNHTRCHTGETPYRCQYCAKTFTRKEHMVNHVRKHTGETPHRCEICKKSFTRKEHFMNHVMWHTGETPHHCTTCGKKYTRKEHLANHMRSHTNDTPFRCEICGKSFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCTFCSKSFTRKEHLINHIRQHTGETPFRCSYCPKAFTRKDHLVNHVRQHTGESPHKCTYCTKSFTRKEHLTNHVRQHTGESPHRCHFCSKSFTRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHLRQHTGETPHCCNVCSKPFTRKEHLINHMRCHTGERPFACTECGKSFPLKGNLLFHQRSHNKGSNAERPFRCDLCPKDFMCKGHLVSHRRSHSGERPHACPDCGKTFVEKGNMLRHLRKHTSDTAAQAAAAAAAAQGNGTVVAQPSTSNIQIPQISQAQVMPPPATTGMLVGQAQHLPIHQQPSHPVVVPTANGNVLATY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00903477;
90% Identity: iTF_01041085;
80% Identity: -