Nsal017094.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nebria salina
Gene Symbol
-
Assembly
GCA_944039265.1
Location
CALUEJ010000209.1:220464-222967[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.0059 0.58 11.6 1.1 1 20 184 203 184 205 0.95
2 22 0.00012 0.012 16.9 2.7 1 23 211 233 211 233 0.99
3 22 5.2e-05 0.0051 18.1 0.1 1 23 239 261 239 261 0.95
4 22 5e-05 0.0049 18.1 0.4 1 23 267 289 267 289 0.98
5 22 4.9e-06 0.00048 21.3 0.2 1 23 295 317 295 317 0.97
6 22 6e-08 5.8e-06 27.3 1.9 2 23 321 342 320 342 0.97
7 22 1.3e-07 1.3e-05 26.3 0.6 1 23 347 369 347 369 0.98
8 22 8.4e-07 8.2e-05 23.7 2.4 1 23 374 396 374 396 0.98
9 22 4.4e-08 4.3e-06 27.7 1.0 1 23 402 424 402 424 0.98
10 22 2.1e-07 2e-05 25.6 2.1 1 23 428 450 428 450 0.98
11 22 2.3e-06 0.00023 22.3 0.5 1 23 456 478 456 478 0.99
12 22 9.4e-07 9.1e-05 23.6 0.5 1 23 484 506 484 506 0.99
13 22 2.4e-07 2.3e-05 25.4 0.4 1 23 512 534 512 534 0.98
14 22 2.3e-06 0.00022 22.4 0.7 1 23 540 562 540 562 0.98
15 22 3.9e-07 3.8e-05 24.8 1.1 1 23 566 588 566 588 0.96
16 22 2e-06 0.0002 22.5 1.6 2 23 593 614 592 614 0.97
17 22 8.4e-05 0.0081 17.4 2.1 1 23 620 642 620 642 0.98
18 22 0.00047 0.046 15.1 7.7 1 23 648 670 648 670 0.96
19 22 4.1e-06 0.00039 21.6 0.3 1 23 676 698 676 698 0.96
20 22 0.00011 0.011 17.0 5.0 1 23 704 726 704 726 0.99
21 22 0.00013 0.013 16.8 0.5 1 23 732 754 732 754 0.97
22 22 1.2e-05 0.0011 20.1 1.0 1 23 760 782 760 782 0.97

Sequence Information

Coding Sequence
atgtcaaattcacACGATTTTGATATAGATAAAGTGTGTCGAACATGTTTatcaacattaaatttaaaatcgctATTCGACGAATACTCCACACAAGATTGTTTCGACGAAATGCTCATGATATGCACATCAGTCGAGTGCTATGAAAACGATGGCTTACCGATCCAAATATGCTCGGATTGCATCAACGAGCTGAATCGCTCGTACGAATTCGCGGTAAAGTGCCGCGAAAGCGACACCAAATTACGGTTATGTATACAAAACCCATCACAGTGCACCAACGCACTTGATCAAACTTATAAACATAACTCAATAGACACTTTAGAAACAGTCATATCACAAAATCATCTAGACAGTGACGTAACAGTGAACAAACACGATTTAGACAGTTTAGACCACTCAACCACTGATTCATTCGAAATCGTACAAGAGGTCAGCACTGTACGGCAATTAAAAGATTGCATTAATTTGGAAACTAACAGTGATCACTCACAAGAAGCTTCCACCCCCCAAATCAACGGTGTGATAGACACCAAGCGACCAACTTCATATACTTGCTCACATTGTGGCAGTTTATTCCCAAACAAGACAAATTTAGACGCTCACACACTGCATTCTTGTGATAAACAATACACCTGCACGATATGTAACAACTCATTCGAACTGCAACACCAGTTGTTATATCACATCCGGACGCACCGGGGcgtcaatttatttttgtgcgACGTTTGTGATAGTGCTTTCGACACAAAAGCGCTCCTAAACATTCACATGCGATCACACACCGATCCCGAACCGTTTTCGTGCTCGATTTGTGATAGCTCATTCACTATAAAAGCGCTTTTAAGCATCCATATGCGATCACACGTCGGGGATAAGCCATACGCGTGTTCAGTTTGTGATAAATCATTCGATACGAAAGCTCTATATAGTGTTCACATGCGCGCACATACAGACAAATCGTGTTCTATTTGTGATAAAACATTCGATActaaatcattattaaataatcacATGCGCACTCATTGTGATAAACCATATGCGTGTACAATTTGTGATAAAACATACGACACTAAATCACaattaaacatacatatacgcAGTCATATCACAGACAAGCACTCATGCACAATTTGTGATAAAGTATACGATACCAAATCACAATTGAACATCCACACACGCACTCACATCGCTGAGAAACCTTATGATTGTTCGACTTGTGATAAAGCTTTCGATACTAAATCACAATTAAACATCCATATGAGGACTCATATCGATAAACATTCGTGTTCGATTTGTGATAAAGCTTTCGATACTAAATCACAGTTAAGTAGTCATATTCGGACTCATATCGCGGAAAAACCGTATTATTGCTCGATTTGTGATAAAGGGTTAGATACTAAATCACAATTAAGTGTTCATATGAGGAGTCATATCACAGACAAACCATACTCTTGTTCGATTTGTGATAAGGGGTTGGATACCAAATCACAGTTAAGTGTTCATATGCGCACTCATATCACAGACAAACCATACGCGTGTGCAGTTTGTGATAAATCATTTGATACAAAAACGCTCTTAAACATCCATATGCGAACGCACCCAAAAGACAAACAGTTTTCGTGTTCGACTTGTGATAAATCATTTGACATTAAAGCGCTTTTAAACATCCATATGAGGACTCACGACAAATCGTATTTATGTGAGCAGTGTGATAGTTCGTTTAGCACGAAAGGTAATTTAAACAATCACATGCGAACTCACTTGGGCGATAAATCGTGTATGTATTGTGATAAGTTATTCGCAACGAAATCACTGTTGAATAATCATATGCGGACGCACAACAGCGACAAACCATACTCGTGTCAAGTGTGTGATAGTCAATTCACAACAAAAACGTACTTAAACATACATCGGCGATCACATTCCGACGATGACCCATATTTGTGTTCAGTGTGTAAATGCTCGTTTAAACAAAAGCTGCATTTGAAGTATCACATGAGGACTCATACGGGCGAGAAGCCTCACGCGTGCGCCATCTGTGATCGTTCGTTCGTAGCGAAATCATTGTTGAAAGTCCACATGCGTATCCACACCGGGGAGAAGCCGTACACGTGTACAGTGTGCGATAGTTCGTTTAAAATGCTGCATCATTTGCGGGGACATATGAGGACGCACACGGGGGAAAAACCGTTCGCGTGCGCCGTGTGTTTTAAGTCGTTCGGACAGAAGtatgttttgaatatacatatGCGGCAACACACTGGTGAGAAACCGTTTGCGTGCGGTGTTTGTAATGTTCAGTTTATAtcgaaatcgaaattaaaGACTCACATGCGTAAACATGATGATGATAGTAAATCGGATTAA
Protein Sequence
MSNSHDFDIDKVCRTCLSTLNLKSLFDEYSTQDCFDEMLMICTSVECYENDGLPIQICSDCINELNRSYEFAVKCRESDTKLRLCIQNPSQCTNALDQTYKHNSIDTLETVISQNHLDSDVTVNKHDLDSLDHSTTDSFEIVQEVSTVRQLKDCINLETNSDHSQEASTPQINGVIDTKRPTSYTCSHCGSLFPNKTNLDAHTLHSCDKQYTCTICNNSFELQHQLLYHIRTHRGVNLFLCDVCDSAFDTKALLNIHMRSHTDPEPFSCSICDSSFTIKALLSIHMRSHVGDKPYACSVCDKSFDTKALYSVHMRAHTDKSCSICDKTFDTKSLLNNHMRTHCDKPYACTICDKTYDTKSQLNIHIRSHITDKHSCTICDKVYDTKSQLNIHTRTHIAEKPYDCSTCDKAFDTKSQLNIHMRTHIDKHSCSICDKAFDTKSQLSSHIRTHIAEKPYYCSICDKGLDTKSQLSVHMRSHITDKPYSCSICDKGLDTKSQLSVHMRTHITDKPYACAVCDKSFDTKTLLNIHMRTHPKDKQFSCSTCDKSFDIKALLNIHMRTHDKSYLCEQCDSSFSTKGNLNNHMRTHLGDKSCMYCDKLFATKSLLNNHMRTHNSDKPYSCQVCDSQFTTKTYLNIHRRSHSDDDPYLCSVCKCSFKQKLHLKYHMRTHTGEKPHACAICDRSFVAKSLLKVHMRIHTGEKPYTCTVCDSSFKMLHHLRGHMRTHTGEKPFACAVCFKSFGQKYVLNIHMRQHTGEKPFACGVCNVQFISKSKLKTHMRKHDDDSKSD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01039437;
90% Identity
iTF_01039437;
80% Identity
-