Nsal002121.1
Basic Information
- Insect
- Nebria salina
- Gene Symbol
- -
- Assembly
- GCA_944039265.1
- Location
- CALUEJ010000013.1:550963-552642[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.3e-07 0.00098 19.7 0.0 2 33 28 59 27 63 0.93 2 2 3.2e-07 0.00059 20.4 0.0 1 35 455 489 455 497 0.93
Sequence Information
- Coding Sequence
- atggaTACAAAAACTATCAGAAAAAAACCGGCGAAGAAAAGGAAATTAAAGAAACCCACGCAGAAAAGAAGACAGTGGAATAATGAATCAATGCAAAATGCGATTCACGCagttaaatatcaaaatttaggCTATCAAGCAGCAGCAAACAAATACAACGTGCCTACGACGTCTTTATTCCGGCTTTGCTTACTCGATAAAGAAGTTACCCACGAAAAAATCAAACCGAAATTGGGAAGAAAACCAATATTCCCACTAAAACTCGAAGAAGAATTAGTTGATCACGTGCTACAAATGGTACGTACACGTCCGAATTTTACGAATTTCGATGTGAAACGCTTAGCCTTCCAGTATGCGGAGTCCAACAATATACCTAATACATTTGCTAAATGTAAAGAAGCAGCTGGTCAACGTTGGTTACAGAATTTTAAAGAACGCCATAAAGACAAATTATTCATAATCAAAGATAATATCGACGAGGAAAACATTACGACAAAATGTGATGAAGAACCAATCAAAACTGAGGCAGTACTTGAGAAAgagacaaatatttttaacgcACTTGAAACAGTGTTACCAACTCACGAAATTGacattattaaaaagaaatttggacTAGAATTAGTTTCTTCGCCAGAgcttcaaaaaaatatagtcgAAAATATACTAACCATGGAACAAACAACgctaaacgaaataaaacacacaataGAAGCACAAGAAATagaacataattttaataggCATATAATggaaaagaatttatttccCAATCATCTAAAAGATAAATTACTATCGAACAATATCAAAACGGAAGAAGAACGAGATagtttaataaagaatttagaTTCTGATATAGAAATGAATATTGATATGCAttgtataagaaatataaatacagttgtTATAAACGATGAAACAGACGATGAAATAATGGAAGATATGAATATGGATATAGAAGaagaaataatgaaactaaaacaaaatattgaagaaGAGCGCAAGTGGGTTGAAGCATCTATAGAAGATGATATAACATTCGTGCAAGCGAATAATTCCGACCAGAATAACGATTTAGAAACAAAAGAACGCACATCAGTTTTATCTCGCGAATTGGAGCAACAATTAGACGAACAAATCTTGataatgcaacaaaaatattcagaatATTCAAAAGATGACTTAAAACGAGTCGCATTCCAAGTAGCTGCATctcataatatatttactaaagaAACTACTACCAATAAAAATACGCAAGATTCTGCAGACAACCATCAAGAAATATTaccaataactcaaaaattaccgcttaagaataaaaaaacaccagataaagaaataaacaagCGCCATACTTGGGATGAGGACTCAATGAAATTAGCGATAAGTGCAATAAAAGATAGAAAAATGGGTTATAAAGTCGCGTCGGATTTTTTTAACGTTCCTAAATCGACTTTATATCGATTAGCTGCTAAAGTTGATTATGACTCGAATGCTCCAGTAAAAATGAAGCTAGGTAGGAAACAAGCATTTACGCCCGAAGAAGAAGAACAGCTCACCGAACACCTATTAGTAATAGAGCGAGCGGTAAATAAAGATGTGAAGAGTTTAGCTAAGAGAAAATCGAATAAAAAACGCTGTTTTAGTTGTGTACAATGCGACAACTCTGACTCATAA
- Protein Sequence
- MDTKTIRKKPAKKRKLKKPTQKRRQWNNESMQNAIHAVKYQNLGYQAAANKYNVPTTSLFRLCLLDKEVTHEKIKPKLGRKPIFPLKLEEELVDHVLQMVRTRPNFTNFDVKRLAFQYAESNNIPNTFAKCKEAAGQRWLQNFKERHKDKLFIIKDNIDEENITTKCDEEPIKTEAVLEKETNIFNALETVLPTHEIDIIKKKFGLELVSSPELQKNIVENILTMEQTTLNEIKHTIEAQEIEHNFNRHIMEKNLFPNHLKDKLLSNNIKTEEERDSLIKNLDSDIEMNIDMHCIRNINTVVINDETDDEIMEDMNMDIEEEIMKLKQNIEEERKWVEASIEDDITFVQANNSDQNNDLETKERTSVLSRELEQQLDEQILIMQQKYSEYSKDDLKRVAFQVAASHNIFTKETTTNKNTQDSADNHQEILPITQKLPLKNKKTPDKEINKRHTWDEDSMKLAISAIKDRKMGYKVASDFFNVPKSTLYRLAAKVDYDSNAPVKMKLGRKQAFTPEEEEQLTEHLLVIERAVNKDVKSLAKRKSNKKRCFSCVQCDNSDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01039149;
- 90% Identity
- iTF_01039149;
- 80% Identity
- -