Nbre001432.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- -
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000014.1:1388529-1390196[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-06 0.0022 18.6 0.0 2 33 28 59 27 64 0.93 2 2 7e-07 0.0014 19.2 0.0 1 35 451 485 451 493 0.93
Sequence Information
- Coding Sequence
- atggATACAAAAACCATCAGAAAAAAACCGGCAAAGAAAAGGAAACTAAAGAAACCCACGCAGAAAAGAAGACAGTGGAATAATGAATCAATGCAAAATGCGATTCGCGCagttaaatatcaaaatttaggCTATCAAGCAGCGGCAAACAAATACAACGTGCCTACAACGTCTCTATTCCGGCTTTGTTTACTCAATAAAGAAGTTACGCACGAAAAAATCAAACCGAAATTGGGCAGAAAACCAATTTTCCCACTAAAACTCGAAGAAGAATTAGTTGATCACGTGCTACAAATGGTACGTACACGTCCGAATTTCACGAATTTCGATGTGAAACGATTAGCCTTCCAATATGCGGAGACCAACAATATACCTAATTCATTCGCGAAGTGTAAAGAAGCAGCTGGTCAACGTTGGTTACAGAATTTCAAAGAACGCCATAAAGAcaaattattcataataaaagataataCCGATGAGGAAAACATTACGACAAAATGTAATGAAGAGTCAATGAAAACTGACGTAGTACGTGAGAAAgagacaaatatttttaatgcacTTGAAACAGTGTTACCACCTCACGAAATCGAcattattaaaagaaaatttggACTAGAATTAGTTTCTTCACCAGAGcttcaaaaaaatattgtcGAAAATATACTAACCATGGAACAAACATcacaaaacgaaataaaacacATAACAGAAGCTCAAGAAATagaacataaatttaataggCATATAATGGAAAAGAATTCATTTACCAATCATCaaaaagataaattattatcgaACAATATCGAAATTGACGAAGAACGAGATAGTTTGATAAAGAATTTAGATACTGATATTGAAATGAAGATTGATATGCATTGTATAAggaatataaatacagttattATAAACGATGAAACAGACGATGAAATAATGGAAGATATGAATATGGATATAGAAGaagaaataatgaaactaaaaCAGAATATTGAAGAAGAGCGCAAGTGGGTTGAAGCATCTATAGAAGATGATATAACATTCGTGCAAGCGAATAATTCAGATCAGAATAACGATTTAGAACGCACATCAATTTTATCTCGCGAATTAGAGCAACAATTAGACGAACAAATCTTGATAAtgcaacaaaaatattcaGAATATTCAAAAGATGATTTAAAACGAGTTGCATTCCAAGTAGCTGCATCtcataatatatttactaaagaATCCACCAACAAAAATACGCAAGATTCTGCAGATAACCATCAAGAAATATTACCAATTACGAAAAAATCACCGcttaagaataaaaaaacaccagataaagaaataaacaagCGACATACGTGGGATGAGGACTCAATGAAATTAGCAATAGGTGCAATAAAAGATagaaaaatgggttataaagTCGCGTCAGATTTTTTTAACGTTCCTAAATCGACTTTATATCGATTAGCTGCTAAAGTTGATTATGACTCGAATGCTCCTGTCAAAGTGAAGTTAGGTAGGAAACAAGCATTTACACCTGAAGAAGAAGAACAGCTCACCGAACACCTATTGGTAATCGAGCAAgcggtaaataaaaatgtgaaaaGTTTGGCTAAGAGAAAATCGAATAAAAAACGGTGTTTTAGTTGTGTACAATGTGACAACTCTGACTCATAA
- Protein Sequence
- MDTKTIRKKPAKKRKLKKPTQKRRQWNNESMQNAIRAVKYQNLGYQAAANKYNVPTTSLFRLCLLNKEVTHEKIKPKLGRKPIFPLKLEEELVDHVLQMVRTRPNFTNFDVKRLAFQYAETNNIPNSFAKCKEAAGQRWLQNFKERHKDKLFIIKDNTDEENITTKCNEESMKTDVVREKETNIFNALETVLPPHEIDIIKRKFGLELVSSPELQKNIVENILTMEQTSQNEIKHITEAQEIEHKFNRHIMEKNSFTNHQKDKLLSNNIEIDEERDSLIKNLDTDIEMKIDMHCIRNINTVIINDETDDEIMEDMNMDIEEEIMKLKQNIEEERKWVEASIEDDITFVQANNSDQNNDLERTSILSRELEQQLDEQILIMQQKYSEYSKDDLKRVAFQVAASHNIFTKESTNKNTQDSADNHQEILPITKKSPLKNKKTPDKEINKRHTWDEDSMKLAIGAIKDRKMGYKVASDFFNVPKSTLYRLAAKVDYDSNAPVKVKLGRKQAFTPEEEEQLTEHLLVIEQAVNKNVKSLAKRKSNKKRCFSCVQCDNSDS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01040783;
- 90% Identity
- iTF_01040783;
- 80% Identity
- -