Nbre010943.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- nfxl1
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000183.1:129604-132712[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 2 3.4e+04 -5.0 1.9 15 19 159 163 159 163 0.85 2 19 0.24 4.2e+03 -1.2 0.2 4 10 194 200 193 201 0.92 3 19 2.3e-08 0.0004 21.2 16.2 1 19 208 225 208 225 0.99 4 19 2 3.4e+04 -5.0 0.8 15 18 251 255 251 256 0.49 5 19 7e-05 1.2 10.1 15.4 3 19 263 279 261 279 0.91 6 19 2 3.4e+04 -4.2 1.4 6 10 304 308 303 308 0.88 7 19 2.7e-08 0.00046 21.1 14.5 1 19 314 332 314 332 0.99 8 19 5.9e-05 1 10.4 12.8 1 18 367 384 367 385 0.97 9 19 3.2e-05 0.54 11.2 15.0 1 18 419 436 419 437 0.94 10 19 9.1e-10 1.6e-05 25.7 13.1 1 19 446 464 446 464 0.97 11 19 0.0005 8.6 7.4 7.4 10 19 513 522 510 522 0.90 12 19 0.24 4.2e+03 -1.2 6.4 3 12 533 542 525 542 0.77 13 19 0.34 5.9e+03 -1.7 4.3 14 19 570 575 570 575 0.90 14 19 0.58 1e+04 -2.4 0.7 5 10 588 593 584 593 0.74 15 19 1.6 2.7e+04 -3.8 1.1 6 10 601 605 599 605 0.53 16 19 0.011 2e+02 3.1 6.3 1 12 611 622 611 622 0.89 17 19 0.67 1.2e+04 -2.6 2.1 6 10 639 643 638 643 0.87 18 19 9.9e-06 0.17 12.8 16.8 3 19 652 668 651 668 0.94 19 19 6.8e-06 0.12 13.4 9.5 1 16 711 725 711 731 0.92
Sequence Information
- Coding Sequence
- atgaATTCTTCGGGGCGTGATAAACCTCCTAAAAGCCCATGGAATAACCCCAAGtctacaacaaaaataaaacctaACCCATCTGAACGTAAATTCCGGGAGGCTCAAGTAAAACTGCAAGCTGCCGTGGATAAATTCGCAAAAGATTACGAATCATCTTCATCGGAAGAAGATTTAGAATCGGATAATTTAATAGGgtctattttaaaaaattactcACAAGTTGGAGGACGAACAGAGAATTTGGGGCGCACCCAAGCGTTTTTGGAAGATACACTTTCGTCAGGGGCCGCAACTTGTTTAATATGTATTGGGTCGATCAAACGCATAGAACAAATTTGGAGCTGTGTAGCTTGCTATTGCTTCTTTCATTTGCGATGTATCGAACGGTGGTCAAAAGACAGCGTCACTCAACAGAAGGAATCATTGCGGGAACAGCCGCAATACGAAAAACCAGTTGAAGTTAAATGGGGCTGTCCTAAATGTCGTTTCGATTATTTACCGGAAGAGATTCCAagagtgtatgtatgtttttgcGGTAAAACTATCAATCCTCCGTTTGAGCCGTGGTTAGTGCCACATTCTTGCGGTGATACCTGCGGCAAACAATTAAAACCTTCGTGCGGACACAGCTGTATTTTGTTGTGTCATCCGGGTCCATGTCCTCCTTGTCCAAAAACTATAACAGCTTCTTGTTATTGTCGGGGACGGCCCGCCAAAATTCAACGTTGTTCCAACAAGGAATGGTCATGTGGGGCTCCATGTCGCAAATTACTCGAGTGTAAAAAACACCCGTGCCCCAAATCATGTCATGCGGGCGTCTGCCCTCCATGCTCCAAACAAAGCAAACAGAAATGTCTATGTGGGGGTCAAGAACAACAAAGGGATTGTGCTACTCCGTTTTGGCAATGCAAAAAGATTTGCGATCGTTCATTATCTTGCGGACATCATCGATGTTTGTTGGTGTGTCACGCTGGACCATGTGGTGTTTGTCCGCTGTCCAAACCACGACAATGTCCATGTGGAAAAACGACCAGTGTACTCCCATGCACTAAAGAAACTCCTACATGTGGGGACACTTGCGGCAAGTTATTAGAATGTGGAGCGCACACGTGTCACTCGCGGTGCCACAAAGACAAGTGCAGCACGtgcTTGGAAATCGTTGAAAAATTGTGTCGTTGCAAACTACATGAAAAAGAAGTCCAGTGCaagaaacaatatttatgCGACACTAAGTGTAAACAAATGCGCGATTGCaataaacatttatgtaaCAGAAAGTGTTGTGATGGAAATTGCCCGCCTTGCGAAAAGCCGTGTGGGCGCACACTAACTTGCGGCCTCCACAAATGCCCTTCTGTCTGCCATCGAGGTCCGTGTTACCCGTGCACTCTAACCACCCTAGTAAAATGTCGCTGTGGAGCAACGTCTCTAACCGTACCTTGCGGCCGCAAGAAACGTACCCGCCCACCGCGTTGCCTTAAATTATGTCGCAACCCACCAGATTGTCACCATAACGCCCGATCTCCACATCGTTGTCATTTCGGCGACTGTCCACCCTGTCGACAGATTTGTGGCCAGAAACTGGTGAAATGTAACCATTTGTGTCCAGACCAATGTCATTCGGCGGTTTTATGCAAAATTAAAGTGGAAAAGGCGACTATGCCATGGGAACAAAGAGATGGTGGGATGGAGAAGAAATGTTTACCATGTCAGCCCTGTAAAGTGCCTGTGTTGGTGACATGTTTGGGGAAACATGAGACTTGTGAATATCCATGCGCCGACGCAGAACCCCGATCATGTCACCGTCCATGTAATCGAATGCAAGCATGTCAAAATCACACTTGTGAGCTCGATTGTCATACAGTTGAAAACTCACCAAATGAAGAACTgGTTGGAACAAATTGCGAACAATGCGAGCAACCCTGTACGGCCCCACGCCCAGAAGGCTGTCAACACGAATGCCGCATACCATGCCACGAAGGGCCTTGTCCCCCATGCACCCAAATGATTCGCCTAAAATGCCATTGCGGCCTAAATCAACCATACGTGCGATGTTCAACTTGGACCAGCAGTGAAGACAAAAATACGTTGCTGACTTGCGGGAACCAGTGTCCaagaaatTATGACTGCGGACATCGTTGCAAGGCGAACTGTCACGCGGGACTCTGCCCCGATGCGGAACTTTGCAAAAAGAAGGTGAAGGTGTCGTGTGATTGCAAACGGATTCGCAAAGAGTTTCAATGCAGCGCGGTGCGGAACAATGAAGCACACGTGGTTTGTGACGAGATGTGCGCGCGAAAACTAGAAATTGAGAAGACACTGAGAGATGCCGAAGCGGAAGAGAAGAAACGGGAACAAGAGGCAAAGAATGCTAAAGAGTTGGAGTTGTTCGAGAAGAAATTTGGAGGGaagaaaaaatataaagaCTGGAAGAAGGTGGATGTTGAAGATGATTCGTTTTTGCTGAAGAATAGAATCTATATTCTTGCGTTTGCTGTAGTTTTAATgacaatttgtatttatacatttgtttaa
- Protein Sequence
- MNSSGRDKPPKSPWNNPKSTTKIKPNPSERKFREAQVKLQAAVDKFAKDYESSSSEEDLESDNLIGSILKNYSQVGGRTENLGRTQAFLEDTLSSGAATCLICIGSIKRIEQIWSCVACYCFFHLRCIERWSKDSVTQQKESLREQPQYEKPVEVKWGCPKCRFDYLPEEIPRVYVCFCGKTINPPFEPWLVPHSCGDTCGKQLKPSCGHSCILLCHPGPCPPCPKTITASCYCRGRPAKIQRCSNKEWSCGAPCRKLLECKKHPCPKSCHAGVCPPCSKQSKQKCLCGGQEQQRDCATPFWQCKKICDRSLSCGHHRCLLVCHAGPCGVCPLSKPRQCPCGKTTSVLPCTKETPTCGDTCGKLLECGAHTCHSRCHKDKCSTCLEIVEKLCRCKLHEKEVQCKKQYLCDTKCKQMRDCNKHLCNRKCCDGNCPPCEKPCGRTLTCGLHKCPSVCHRGPCYPCTLTTLVKCRCGATSLTVPCGRKKRTRPPRCLKLCRNPPDCHHNARSPHRCHFGDCPPCRQICGQKLVKCNHLCPDQCHSAVLCKIKVEKATMPWEQRDGGMEKKCLPCQPCKVPVLVTCLGKHETCEYPCADAEPRSCHRPCNRMQACQNHTCELDCHTVENSPNEELVGTNCEQCEQPCTAPRPEGCQHECRIPCHEGPCPPCTQMIRLKCHCGLNQPYVRCSTWTSSEDKNTLLTCGNQCPRNYDCGHRCKANCHAGLCPDAELCKKKVKVSCDCKRIRKEFQCSAVRNNEAHVVCDEMCARKLEIEKTLRDAEAEEKKREQEAKNAKELELFEKKFGGKKKYKDWKKVDVEDDSFLLKNRIYILAFAVVLMTICIYTFV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041416;
- 90% Identity
- iTF_01041416;
- 80% Identity
- -