Basic Information

Insect: Nebria brevicollis
Gene Symbol: stc
Assembly: GCA_944739395.1
Location: CALYJC010001174.1:13017-19047[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.51 8.8e+03 -2.2 2.8 3 8 623 628 619 629 0.80

2 10 3e-06 0.052 14.5 13.7 2 18 668 683 667 684 0.91

3 10 2.1e-08 0.00037 21.4 11.8 1 18 720 737 720 738 0.97

4 10 3.1e-07 0.0053 17.7 14.4 1 18 778 795 778 796 0.98

5 10 1.4e-05 0.24 12.4 12.2 4 19 844 859 837 859 0.88

6 10 0.073 1.3e+03 0.5 9.2 1 11 899 909 899 921 0.90

7 10 1.1e-10 1.9e-06 28.7 14.3 1 19 926 944 926 944 0.98

8 10 2 3.4e+04 -4.7 10.6 9 19 990 1001 981 1001 0.81

9 10 1.4e-06 0.023 15.6 11.2 1 15 1037 1051 1037 1058 0.94

10 10 2 3.4e+04 -4.8 14.6 3 19 1070 1088 1069 1088 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.51	8.8e+03	-2.2	2.8	3	8	623	628	619	629	0.80
2	10	3e-06	0.052	14.5	13.7	2	18	668	683	667	684	0.91
3	10	2.1e-08	0.00037	21.4	11.8	1	18	720	737	720	738	0.97
4	10	3.1e-07	0.0053	17.7	14.4	1	18	778	795	778	796	0.98
5	10	1.4e-05	0.24	12.4	12.2	4	19	844	859	837	859	0.88
6	10	0.073	1.3e+03	0.5	9.2	1	11	899	909	899	921	0.90
7	10	1.1e-10	1.9e-06	28.7	14.3	1	19	926	944	926	944	0.98
8	10	2	3.4e+04	-4.7	10.6	9	19	990	1001	981	1001	0.81
9	10	1.4e-06	0.023	15.6	11.2	1	15	1037	1051	1037	1058	0.94
10	10	2	3.4e+04	-4.8	14.6	3	19	1070	1088	1069	1088	0.92

Sequence Information

Coding Sequence: ATGGCCCAGTGGAACCCGTTTTTTGGTGTTCCAAATCAAGATAAGTTCGACGAGCAACAAAGCATAAGCTCGCCGAATATTTATAACGCCCAACAGCTTGCGTACGCTAGTGCGCCGATTCCACAAGTCAATTATAACGGGTACTATTTACCGAATCACTTCACAGCGAATTATGGGGGCGAAACGGTGTATAATGTTCAAGATTTAGAGGCGCACCATATTCGGCAGGCCAGCTCCATGAAGAATGCTTCAATCATGTGTGACAAACCGGAGGAACTATTAAGCAACTCAAAATTAACACCGACCGCGGCAGAATTTAAGCCGGGCTCCAGCACAAATTATCAGTTGAATTCACAGACTTTTTACGGGAAATCGCAAAAATCTGCAGATGAAATTCACAAAGGAGCTATACGTAAACACAATAGCACTAAGGGTGACTTTGTAGAGGCGTCTTCATCTTCTTCTATTAAAAACACTGATGAAACGCAAAAATTGTCGTAcggtaaaaataattcaaatccaaagtataagaaatatgatcgTAATGCACAACAAAAACGAGACGAAAACGAAGACGTTGCAAATTACGTAAAACCAAGCGataacaaattcaataatggaagaaattataaaagtacTGACaaatcaaatagtttttaCGATAACAGTTCCATTTCCAAGTACATCAAGCGTGAAAATAACAATTCAAGGCAAGCGCACACTTTAGACCAGCAAAATGAATCGCCAAAGCTTCACAAACTAGAATATCGCGATATTAATTTCGCTAATTCAAACTTAAAAAGCGAACCCTCTAATAATGAGTTCACTAAAACTGACACGCGACCGGTCAAGTATGAAAATTCAATTCAAAACGAGACCGAAAATCGCCGTCACAACAAATATGAAAAtcgtaacaataaaaatgagcCAAATTCGTCACGAAGTGAAAACCGTTACAATAAGTACGACAAACGTGAACAGAGTTTCAGAAAACTCGGCGACAACCGATACTCGAATGAATCGACAAGAAGTGAACACCGGTACAATAGACATCGTGAAAACGAGCTTGAAAATCAATCAAAACCTGAAAATCgatataaaaaatttgaaaatcgcGATACCTTAAATCAAAATGATGATTCATCATACAAAAATGAGCATCGGAATAATAATAAGCACGATAAAAAAGAGAATTGCTCGCAGAACGACGAGAGACCCGGGAAAACCGAAAGCAGGTACCAAAAATCGGAACATTTCAATCCGAATGACACGAGAAAAGAGAACCGTTACAATAAACGTGAGAATGACTCAGACAACCGTTATCAATCGTACCGCGAATCGTTCGCGCCGAATGAACCAAAAACGGATGCGCGCTACCAAAAGTTCGAAAATCGCGACGCATACAGCCGCAATTATCGAAATGCCGCAGATGGGAATCAATACCAACGCGACAACTATAATCGATCAAACCAAAAGAGTTACCGGACCAATAACAGATACGATAAAACGTACGAGAATTGGCGTAGCACAGATTCGAGAAATCAACTTGATAAACCTCTAGAGAAAGAACAAAATGATTATAAAGATGATCAAATTAAAGATCGTAAAGATAATAAGAAGATgttgcataataataatagtgatGTTTCTAGGAATTATAAAGCTTTAGATGATGTTTCGCAACGAGATCGGTTAACGGAGCAAGTGAACCGAGGCACTCTGGAGTGTTTGGTGTGCTGTGAACGCGTTAGACAAACAGATAAAATCTGGAACTGTCGAAATTGCTATCACATCTTCCATTTGCGGTGCATTACAAAATGGGGAAATACTTCAAAAGATGATAATGGTTGGCGTTGTCCGGCATGTCAACACACCTGTACCGAGATCCCCACGGGTTATTATTGTTACTGCGGCAAAGCGTACGATCCACAATACATACCGGGAGACACGGCGCACGGATGTGGCGATATGTGCGCCAGATTGGGCGTGAAGCTCGGTTGTGCGCATCGCTGCACTCTCTTGTGCCACCCCGGTCCATGTCCGAAATGCGAAGCATTAGTATCCAAGCACTGTAACTGTGGTGCAACAACTCAAATGGTGAAATGTAGCGCAGAAACAATTCTAATATGTACGGCAGTCTGTAGTAAACTGTTAAATTGTGGCGTGCACAAGTGTACCAAAGTTTGCCACGGCGGAGACTGCGACCAGTGTCTCGAAATTATTGACCAAGAATGCTTTTGCGGTCACAGCACTCGCACAATTCCATGCAATAAAATGCAATATGATGTGAAGAACTACAGCTGCGAAAGCAATTGTGGTCAGTTGTTGACGTGCGGCAACCACCAGTGCAAGGAGCTATGCCATCCGGAAACTTGCCCACCGTGCGTACGGGCCGCGGATCAAGTTCAAACGTGTCCATGTGGAAAGAGTCCATTAGAGATTGTTCGCGTTTCTTGTCTAGATGCGATACCCTCTTGTGGAAAGGTTTGCGGTAAACGATACACACTTTGCGGCACATCGGCAGAACCTCATGTTTGTAAATCAGAGTGCCACGAAGGAGACTGTTCGCCGTGTCCGTTGAGTAGTTTTGTGCGCTGCCGCTGCGGTCACATGAGTTGTGAAATTAAGTGCTCTGTCTTGAATACTCGCACGGACGATGCACGCTGCGAGAAACGCTGTACTAAGAAAAGATCTTGCGCGAAACATAAATGCAACCAATTGTGCTGCATTGATATCGATCATATCTGCCCACTACCGTGCAACCACATGCTGACATGTGGCCAACACCGTTGCGAGCAAACATGTCACAAGGGCCGGTGCCAACCGTGTTGGAGAACTAGTTTCGAAGAACTGTATTGTGAATGCGGGGCGAATGTTATTTACCCGCCGGTCCCGTGCGGTACCAAGCGTCCTGCGTGTGCACGATCGTGTAAGAGAACGCATGACTGCAGTCACGAAGCATTGCACACGTGTCACAATCAACCTGAATGTCCACCGTGCACCGTACTAACGACCAAAGTATGCTATGGGGGTCACGAGAAACGTTCAACAATCCCATGTCATCAGAAGGAATTTTCGTGCGGACTACCATGTGGTAAAGAGTTGGCATGTGGCAAGCATAAATGCCTGTCGCCTTGCCATAGAGGTGCGTGCCTGAAAGAGGGGCAAGTGTGTGTGCAGGCGTGCACGACAGTGCGCAGCGATTGCGAGCATGCATGCGGTCTCCCCTGCCATCACAGTCTCTGTCCGGAATCCCCATGCAGACAAACGGTGAAAGTGACGTGTCAATGCGGCCTACGTTCATCAACACGCGCATGCGTCGACATGAGTGGGGAATATCAACGGATTGCTACCTCAATGCTTGCTTCGAAAATGGCCGATATGCAGCTGAGTCATTCGGTTGATATCGGTGATATTATTGGGGCTACCACACGGAAAACATTGAAAACATTAGATTGTAATGACGAGTGTCGCCTGATAGAAAGAAACCGACGTTTAGCGATCGGTTTGCAAATCCGGAATCCAGACTTGAGTGCCAAATTAACACCGCGTTATTCGGATTTCATGCGGCAATGGGCGAAAAAGGACTCACATTTCTGTCAACTGGTGCATGATAAATTAACCGAACTGGTTCAACTTGCGAAACAATCGAAACAAAAGTCTCGCAGCTATTCGTTCCCATCGATGAATCGCGATAAACGACAATTTGTACACGAATATTGCGAGCATTTTGGGTGTGAGAGCGCGGCATACGATTCGGAACCGAATAGAAATGTTGTTGGAACGGCTGTTCGTGATCGCGCGTGGTTGCCAAGTTGCAGCCTGTTGGAATTAATACAACGCGAAAGTGGACAACGTAAAGTTCCTGGCCCTATTCTGAATCGTCCGTTGGGCGTGTCGAAAGGCGTGTCCGATATCGTTTCATTGAAAATCAACTCTTTCGCAATGAAGCCGGCAACGACGGCTTCCGTTGTTGCACAAGCTGCCTCCATTTCAACAACTGCAACCACTAATCAAACACAACCACAAACATCAGATACTTCAGAAACTATAGATTATTTCAATTTCCCtcctttaaataaataa
Protein Sequence: MAQWNPFFGVPNQDKFDEQQSISSPNIYNAQQLAYASAPIPQVNYNGYYLPNHFTANYGGETVYNVQDLEAHHIRQASSMKNASIMCDKPEELLSNSKLTPTAAEFKPGSSTNYQLNSQTFYGKSQKSADEIHKGAIRKHNSTKGDFVEASSSSSIKNTDETQKLSYGKNNSNPKYKKYDRNAQQKRDENEDVANYVKPSDNKFNNGRNYKSTDKSNSFYDNSSISKYIKRENNNSRQAHTLDQQNESPKLHKLEYRDINFANSNLKSEPSNNEFTKTDTRPVKYENSIQNETENRRHNKYENRNNKNEPNSSRSENRYNKYDKREQSFRKLGDNRYSNESTRSEHRYNRHRENELENQSKPENRYKKFENRDTLNQNDDSSYKNEHRNNNKHDKKENCSQNDERPGKTESRYQKSEHFNPNDTRKENRYNKRENDSDNRYQSYRESFAPNEPKTDARYQKFENRDAYSRNYRNAADGNQYQRDNYNRSNQKSYRTNNRYDKTYENWRSTDSRNQLDKPLEKEQNDYKDDQIKDRKDNKKMLHNNNSDVSRNYKALDDVSQRDRLTEQVNRGTLECLVCCERVRQTDKIWNCRNCYHIFHLRCITKWGNTSKDDNGWRCPACQHTCTEIPTGYYCYCGKAYDPQYIPGDTAHGCGDMCARLGVKLGCAHRCTLLCHPGPCPKCEALVSKHCNCGATTQMVKCSAETILICTAVCSKLLNCGVHKCTKVCHGGDCDQCLEIIDQECFCGHSTRTIPCNKMQYDVKNYSCESNCGQLLTCGNHQCKELCHPETCPPCVRAADQVQTCPCGKSPLEIVRVSCLDAIPSCGKVCGKRYTLCGTSAEPHVCKSECHEGDCSPCPLSSFVRCRCGHMSCEIKCSVLNTRTDDARCEKRCTKKRSCAKHKCNQLCCIDIDHICPLPCNHMLTCGQHRCEQTCHKGRCQPCWRTSFEELYCECGANVIYPPVPCGTKRPACARSCKRTHDCSHEALHTCHNQPECPPCTVLTTKVCYGGHEKRSTIPCHQKEFSCGLPCGKELACGKHKCLSPCHRGACLKEGQVCVQACTTVRSDCEHACGLPCHHSLCPESPCRQTVKVTCQCGLRSSTRACVDMSGEYQRIATSMLASKMADMQLSHSVDIGDIIGATTRKTLKTLDCNDECRLIERNRRLAIGLQIRNPDLSAKLTPRYSDFMRQWAKKDSHFCQLVHDKLTELVQLAKQSKQKSRSYSFPSMNRDKRQFVHEYCEHFGCESAAYDSEPNRNVVGTAVRDRAWLPSCSLLELIQRESGQRKVPGPILNRPLGVSKGVSDIVSLKINSFAMKPATTASVVAQAASISTTATTNQTQPQTSDTSETIDYFNFPPLNK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01041415;
90% Identity: iTF_01041415;
80% Identity: -