Nbre007699.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- -
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000119.1:130659-133567[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.0041 28 5.8 0.0 21 48 268 295 250 301 0.83 2 7 0.51 3.5e+03 -0.9 0.5 23 34 298 309 292 331 0.67 3 7 0.63 4.3e+03 -1.2 0.1 21 38 324 341 316 355 0.75 4 7 0.046 3.1e+02 2.5 0.0 21 44 352 375 346 382 0.87 5 7 0.00069 4.7 8.3 0.1 20 44 379 403 372 407 0.89 6 7 0.00055 3.8 8.6 0.3 21 45 408 432 404 435 0.89 7 7 0.00013 0.92 10.6 0.3 21 45 436 460 432 465 0.91
Sequence Information
- Coding Sequence
- ATGTCGATTTTAAGCGATTTTGATGTGGATAAAGTGTGTCGAGTGTGTTTAACACGTTCGGAAAATATGAAATCGTTGTTTGCAGTGAGTTCGAGCGCGGTGGTGTTAAGTTTCGCGGAGTTATTATCGAAATTCACTCCGATACAAtgcGCCACCAACGATGGACTACCAAACCAATTATGCAATAATTGCACGAACCAATTAACGCAATTCAACACATTTCACGCAAAATGCGTCGAAACGAACCAAGCATTGCAGGCATATGTAGAAAAGCGACGCAAAACGGACGTAAACGTTTTCGCGGCCGTCGATATCAAAACCGAATTTGATCCGGTTGAAGCAATCTACATCGAAGAAACCGATCACCAAAACGATGTTTACACCAATTTCAACTCATTAAAAAATCCCCTCGACATATCCGATCTACAAGTGGACTTGGAACAAGATTTAGACGTAATCAAACACGAAATCGATGAAAATACCACCGCTAAAATCAgcctaacctcaaaaaacacgCCTCAAACAACAATTACAACTATAAATACTGGTTTAGACACTCTAGAGTTAATTGCGAAACCATATGCGTGCGAGACGCGCATTGCAAATCCTGGTTTTGAGGAAGTTTTAATCAAAACTGATGCTGAAGAATCAATATTTATGGGTAATCAGGGCCATTTAGATATTTCTGTATTGAAAATCGGCCCTAAACGCAATACTAGTTTAATGATACATGAAATCGGGGAAATTCAAGCTAAACTTCCTGAAAATGCGACTGATAACGCGTCAAATGTGGAAGAAGCGATTGAGAAACCATATGCGTGTACTCTTTGTACGAGTGCTTTTAAAGCGATGAAGAATTTGAACGTGCATATGAAGAAGCATAGGGGTGGGAAACCATATTCGTGTCCTACTTGTAGTAGGACGTTTAACCGGAAGTCGTATTTTGCTGTACATTTGCGTACGCATACAGGTGAGAGACCATATGCGTGCGCAATGTGTGAGAGTTCGTTCAACGAGAAATCAGCGTTGACGGTGCATACAAGGATGCATACGAATGAACGTCCGTTTCCGTGCACTGTGTGCGATAGTTCGTTCAAACAAAAAGCGACGTTGACGGCTCATATGCGCAAGCATAACGGGGAGAAACCGTATGCGTGTTATATTTGTAAGTTGGCGTTCAGGCAGGATGCGCACTTGAAGACTCATATGCGTACGCATACTGGTGAGCGACCGTATTGGTGTCCGGTGTGTAAGCGTGCGTTTAAGCAGAAGATTAGTTTGACGCGTCATGTGCGTGTGCACACTGGGGAGAAACCGTATGCGTGCACGTATTGCAAGAGTGTGTTTAATCAACGCAGGAAGCTTGCGAAGCATTTGCGAACGCATGCCGATACGCCATTAGGGTAA
- Protein Sequence
- MSILSDFDVDKVCRVCLTRSENMKSLFAVSSSAVVLSFAELLSKFTPIQCATNDGLPNQLCNNCTNQLTQFNTFHAKCVETNQALQAYVEKRRKTDVNVFAAVDIKTEFDPVEAIYIEETDHQNDVYTNFNSLKNPLDISDLQVDLEQDLDVIKHEIDENTTAKISLTSKNTPQTTITTINTGLDTLELIAKPYACETRIANPGFEEVLIKTDAEESIFMGNQGHLDISVLKIGPKRNTSLMIHEIGEIQAKLPENATDNASNVEEAIEKPYACTLCTSAFKAMKNLNVHMKKHRGGKPYSCPTCSRTFNRKSYFAVHLRTHTGERPYACAMCESSFNEKSALTVHTRMHTNERPFPCTVCDSSFKQKATLTAHMRKHNGEKPYACYICKLAFRQDAHLKTHMRTHTGERPYWCPVCKRAFKQKISLTRHVRVHTGEKPYACTYCKSVFNQRRKLAKHLRTHADTPLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041204;
- 90% Identity
- iTF_01041204;
- 80% Identity
- iTF_01039592;