Nbre012069.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- -
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000216.1:393281-394816[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0012 8 7.6 0.3 11 44 78 112 67 116 0.84 2 13 0.0081 56 4.9 0.1 21 46 117 142 113 149 0.85 3 13 0.59 4.1e+03 -1.1 0.0 21 44 145 168 141 171 0.78 4 13 0.0026 18 6.4 0.1 21 51 201 231 195 233 0.86 5 13 0.017 1.2e+02 3.8 0.1 21 44 229 252 225 256 0.89 6 13 0.00084 5.8 8.0 0.0 20 44 256 280 243 287 0.81 7 13 1.6 1.1e+04 -2.4 0.0 22 40 286 304 281 316 0.69 8 13 0.039 2.7e+02 2.7 0.1 21 44 313 336 306 341 0.86 9 13 0.002 14 6.8 0.1 21 44 341 364 337 368 0.90 10 13 0.0011 7.4 7.7 0.0 21 45 369 393 365 399 0.90 11 13 1.3 8.7e+03 -2.1 0.0 24 44 400 420 393 423 0.77 12 13 0.27 1.9e+03 -0.0 0.3 26 46 452 472 445 480 0.76 13 13 0.076 5.2e+02 1.8 0.2 23 49 477 503 468 506 0.86
Sequence Information
- Coding Sequence
- ATGGAAACTGATGACAAGATTGACgtaaaaacagaaaatgacGATAAATTAGATAGTGCGACAGTGGAGCCGTTAGAGTTTATCGAAGTCGAAATGCACGATTCAAACGAAACGGAAAACGAGCAAACCGACCCGTTAAAAGTATCGAAAACAGTGTTAAAAACCATCAAATCGATTTCGAGCGACGCTAAACGCAAGAAGAGAATCAACAGTAAACGGAAATGTAAACAAGTCACAGATTCGCCGATGAGTTTCGAGCAAAGCGAGGAGAAAACGCATTTGTGCACGTATTGTAATAGTTCGTTTCGCCGTAAAAGTGACTTAACGCGTCATATACGCACGCACACCGGCGAAAAACCGTTCGCGTGCACTTATTGCGAAAGCTCGTTCAGCCAAAAGACTGACTTAACACGTCACATCCGAACGCACACCGAAGAAAAACCGTTTCCGTGCTCAGTTTGCGGAAGCTCATTCAGTGAAAAAACCTACCTAAAGAACCATATGCGCACACATACCGGCGAAAAAACATACGCTTGTTCAGTGTGCGGTAAACTATTCGGCCGTAAACTAATATTAAACAACCACATGCGGACGCACACCGGCGAGAAACCATATTCCTGTAAAGTGTGTAACACATCATTCGCCCAAATTTCAAGTTTGAGGGGTCACATGCGGATACACACCGGTGAGAAACCATATGCGTGCACAATATGCGCTAGTTCGTTCGGCAAGAAACCGGATTTAACGCGCCATATCCGAACGCACACCGGCGAAAAACCGTTCTCGTGTCCTGTGTGCGATAACGCGTTCAGTCAAAAAGCGTATTTGAAGAATCACATGACGACGCATACAGGAGAAAAATCGCATTCGTGCACGATTTGCGGCAGCTCATTCACACGCAAAACAGGCTTAGTCAGTCATATGCGCACGCATACTGGCGAGAAGCCTTATAAGTGCACGATTTGTAGTAATTCGTTTAGTACGAAACCGGATTTAACGCGTCATATCCGCACGCACACTGGTGAGAAACCATACGCGTGCGTAATCTGCGATAGATCATTCAGCCAAAATGTGAATTTAAAAAACCATATGCGAACTCACACCGGCGAAAAACCGTATTCGTGTATGATATGCGATAGCTCGTTCAATCAGAAAACTAacctaaaaatacatatgcGCACGCACACTGGTGAGAAATTGTACGCGTGTACAATTTGCGATAAATCATTCAATGTTAAGATTAACTTAACGAATCATATGCAAACGCATGTGAATGATACATGTTTACGCGATAGTACGTTTATAGCGActgtgaatttaaataatcatttGAGTATTGGTGATAGGATTTATGCGTGCACGATTTGTAATAGTTCGTTTAATCATATATCGCGGTTAACGCGACATATGCGCGTGCACAATGAGGAGAAATTGCATTTGTGCACGATTTGCAAAAGTACGTTTCCCATCAAAGCGAATTTAACGCTGCATatgaaacaaacacattttattgCAGATGATCTTAGTGGTTTTTAG
- Protein Sequence
- METDDKIDVKTENDDKLDSATVEPLEFIEVEMHDSNETENEQTDPLKVSKTVLKTIKSISSDAKRKKRINSKRKCKQVTDSPMSFEQSEEKTHLCTYCNSSFRRKSDLTRHIRTHTGEKPFACTYCESSFSQKTDLTRHIRTHTEEKPFPCSVCGSSFSEKTYLKNHMRTHTGEKTYACSVCGKLFGRKLILNNHMRTHTGEKPYSCKVCNTSFAQISSLRGHMRIHTGEKPYACTICASSFGKKPDLTRHIRTHTGEKPFSCPVCDNAFSQKAYLKNHMTTHTGEKSHSCTICGSSFTRKTGLVSHMRTHTGEKPYKCTICSNSFSTKPDLTRHIRTHTGEKPYACVICDRSFSQNVNLKNHMRTHTGEKPYSCMICDSSFNQKTNLKIHMRTHTGEKLYACTICDKSFNVKINLTNHMQTHVNDTCLRDSTFIATVNLNNHLSIGDRIYACTICNSSFNHISRLTRHMRVHNEEKLHLCTICKSTFPIKANLTLHMKQTHFIADDLSGF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01041081;
- 90% Identity
- iTF_01041081;
- 80% Identity
- iTF_01039444;