Basic Information

Insect: Nebria brevicollis
Gene Symbol: RREB1
Assembly: GCA_944739395.1
Location: CALYJC010000130.1:1352778-1360425[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00024 0.022 16.1 0.7 1 23 103 125 103 125 0.98

2 16 0.00026 0.024 16.0 0.3 1 23 137 159 137 159 0.98

3 16 3.2e-05 0.003 18.8 3.6 1 23 165 187 165 187 0.99

4 16 8.6 8e+02 1.7 0.3 1 19 260 279 260 284 0.67

5 16 2 1.8e+02 3.7 4.7 5 23 293 312 290 312 0.91

6 16 1.3 1.2e+02 4.4 0.2 1 20 365 384 365 386 0.94

7 16 0.095 8.8 7.9 0.1 1 23 517 539 517 539 0.96

8 16 1.1e-05 0.001 20.3 0.8 1 23 549 571 549 571 0.99

9 16 0.0019 0.17 13.3 2.3 1 23 577 600 577 600 0.97

10 16 0.00093 0.087 14.2 2.8 1 23 968 991 968 991 0.96

11 16 0.0018 0.17 13.3 2.2 2 23 1231 1252 1230 1252 0.97

12 16 0.12 11 7.6 4.2 1 23 1258 1281 1258 1281 0.96

13 16 0.14 13 7.4 4.0 1 20 1314 1334 1314 1338 0.94

14 16 0.26 25 6.5 2.3 1 23 1393 1416 1393 1416 0.95

15 16 0.021 2 9.9 0.5 3 23 1463 1483 1461 1483 0.93

16 16 0.0021 0.2 13.1 5.5 1 23 1489 1511 1489 1511 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00024	0.022	16.1	0.7	1	23	103	125	103	125	0.98
2	16	0.00026	0.024	16.0	0.3	1	23	137	159	137	159	0.98
3	16	3.2e-05	0.003	18.8	3.6	1	23	165	187	165	187	0.99
4	16	8.6	8e+02	1.7	0.3	1	19	260	279	260	284	0.67
5	16	2	1.8e+02	3.7	4.7	5	23	293	312	290	312	0.91
6	16	1.3	1.2e+02	4.4	0.2	1	20	365	384	365	386	0.94
7	16	0.095	8.8	7.9	0.1	1	23	517	539	517	539	0.96
8	16	1.1e-05	0.001	20.3	0.8	1	23	549	571	549	571	0.99
9	16	0.0019	0.17	13.3	2.3	1	23	577	600	577	600	0.97
10	16	0.00093	0.087	14.2	2.8	1	23	968	991	968	991	0.96
11	16	0.0018	0.17	13.3	2.2	2	23	1231	1252	1230	1252	0.97
12	16	0.12	11	7.6	4.2	1	23	1258	1281	1258	1281	0.96
13	16	0.14	13	7.4	4.0	1	20	1314	1334	1314	1338	0.94
14	16	0.26	25	6.5	2.3	1	23	1393	1416	1393	1416	0.95
15	16	0.021	2	9.9	0.5	3	23	1463	1483	1461	1483	0.93
16	16	0.0021	0.2	13.1	5.5	1	23	1489	1511	1489	1511	0.98

Sequence Information

Coding Sequence: ATGCGCGACACTGCACCAAGTACGCCACTGCCCGGTCCTCATGTGCCTCTAGTGAATCGACTTCTTCAACCTGCTTCTCCTACTGTTGTCAACATGGATGACAGTCTTAACAACACCAAAGAACTCCAAAGAAAATCCGACTCAACGACCGATGAAAGTATGTTGGAAACCAGCTCAGCAATATCGTTAGAATCGACACACAATGGCGATTCCGACCTGGAACCAATGGATATCAGTAAAACCACGGCAATCGATACTAGCGACGCGCAAAGTGACTGCAGCTCGCCGAGTAACGATTACAAAAAATACTTCTGTCCCATCTGCGACATAACACTCATATCGCAACACGACTTCACGCTACACATTCGATCCcacaacaacgacaacgagATCATCACCGAGAAAGGTTTCACCTGTCGCATTTGCTCAAAAGTTCTGAGTTCCAGTTCGAGTCTGGACCGGCACGTACTGGTCCATAGTGGGGAAAGACCTTTTAAGTGTAAACTATGCGCGGTGACCTTTACCACGAATGGCAACATGCATAGACACATGCGCACGCATACCCAAAAACCTGGCGAGAATTACGAATCTGATGGGAGTACGGATAGTAACACTAGTGGCAATTCGGGGAAAACCCGTAAACGACGCATCGAATTCAACAACAATAAACTGGTAGACAATAGCAATAAACGTAAATCAGATTGTTTTGAAGATGACGATAATGCAAATCGTCGTAAAAAGaattttaacaataacaatataaaTGAACTGCAGAAGTATCATTGTCCTGTTTGCGATCGAGAGGATTTTGCTTCGTTGAACGTTTTTGAAACACATTTAGAAGACAACCATCCTGAGTATGAAGTGAGTTGCATTACTTGTAACTTGAGTTTCAAAAACCACAGAGCTTTAAACCTACATCGTCATATGAGTCACAACTCTGAGCaggttaataatattaacaataaagCCAAAAACGCTCATTTGGGTTTCAAGGACTTGACTTTCGTCGACTTTTCCAGCGATAAGTTCCCGCATATCGCACGCTACGCGTGCGAAAAATCTTTGCATAAACCTGTAACGACTCAAAAATTTGTCTGCGACAAATGCGTCTTGGCATTTCCGTGCTCGAGCGCTTTGCAAATGCATCAAGACGAATGCTTGAAAGGTCGAAACCATTTGGTTTCGAATCTAGAATATCCGACTGATCTGTCTAGAAAGACCTCCGATGAGGAAATACGTCGCGACAACTTTTTCGCACATTTAGACTTGCAGAATAAATCACCTCCGACAAGTCCAGTCTCTGACGACGTCCAAGATAGTCGACCAGACATTAAACCGGTGATAGACTCCAAAGATTTGGCGGATATTCAATCTATTTTATCCATGACTTCTAACGGCAGTTTGCTCCAACATTTACGTACCAAACCACAAACTGAACTTATACCGTTACCACAAGAAACTATTCGAACACCTGAACAACATCCTGAAGAAGAGTCGCAGGATATTTTCGCTGCTGAGTTTCGTAAGATGAAACTCCGTGGCGAGTTTCCATGTCGATTATGCACGGCTGTTTTTCCAAATTTGAGAGCTCTTAAAGGTCATAATCGAGCTCATTTAAATGGGAATGGAAATACTGGTCCATATCGGTGTAATATGTGCCCACATAGTTCTATTGACAAAGCAGCTTTGATCCGGCATATGCGAACTCATAATGGCGATCGTCCATATGAGTGTGCATTGTGTAATTATGCTTTTACAACTAAAGCTAATTGTGAACGTCATTTACGGAATCGACATGCGAAAACAACTAGGGAGGAAGTTAAGAAGAACATCATCTATCACCCGTCTGAAGATCCAACGAATGATGAGATAAATAAGTTGAATGCATCGCGCGATATGAAGCATAATTTCTTGAACAGCTCTACCGAAGATGAACTAccagaaaaactaattaattcaACTCCAATTGTCAAAGAGCGAATGACGCCAGAAATTCGTAATTTGATCCTACCTCAAGCGTTGGGTATAACAATACCACCTTTAATTCCAAAAGATCTTTTACCAAATTCCCACTCACCAATCCTagcaataaaaaaagatttaatgCCTCTTCGACTAATACCCAAAGAAGAAAAATTACCTTTTCCATTCCCTAAACCACCGAGTTTCTCCTACAAATCCGAGTTACCTGAGAAGCTGGAAGAGCCAAAAATTCAAGTGAAATGTTTCgataatttgaaacaaattccgGATTACGATACACAATCAGACGATGACGAATCCAACCATTACGACGACCATCCAAAGGTTGATCATCCAATTGATTTGAGCATGGATGTTTTAGATCTCAGCAAGAAGAAAGAACAGCCTAAAGAAGTCGAAGATGAACCTCAAGATTTTACCAAACGCACTCTGGAATCAGCTCCCCTCCATCCGACAAACGCTGCTCAATTGTTGCTGGctcaacaattatttaaaagccGATTCTATCCAAATCCTTTATCACTTTACCAACACCCAACTCTACTGCCTTCTTATCCTTATCAGTTATTGTTTCCCCAATCGTTCATGAACACCCAAGATATAAAAGAAAGGATGCTAAGTCTTCAACTGAGTGGtggtaatattattaatgatcAATATTCACCAATGTCGAATGGTTTCCAAGCGTTACACCAACAAGCAATGTCCAAAATGCAAGATATGAACTACCAAAAAGACGACGAAATCAAACCACCATTACACATCAATACCCAATTAGGCGATAGTGTTAAATTACAATCGCCAAAACCGAAAACGCCAGATATGATCCATAGTCCAAATTCCGTTAAAATGGTCATCAAAAATGGTGTTCTAATGCCCAAACAAAAACAACGACGATACAGAACAGAACGACCATTTTCATGCGAACACTGTTCAGCACGTTTCACATTACGGTCGAATATGGAACGACATATAAAGCAGCAACATCCACAATTTTGGTCGCAACGTCAACGATCTGGTATCACGCCAACAGGACGTAAACCTACCCCCACCCAGACATCAACAAAACCGCCGTTTTACGAATTGAACGTACCCAACTACGATTTAAGCATACCAAAGTTAAACGACTCTTTAGTCAATGAAACCAAAGAAATGTTGCCAATTTCGCAACAAGTCAAATACGCTATTTTAGCGCAGAAGTTAAAGGCGCATAGTGGCGATTCGAACTTAACCATTCCGAGCAAAGATGAGGATGAAGACGCTTTGATTATCGATGAAGAACATTCAAGATCTGACGTTCATGCAATGGACTTTTCTAACGAACATAAGCCTAGGTCTTTGGAAGAAAAGATGCTTCAGTTGCGGCAGATTCGTGAAAAGGAATTGAAACTCAATGAAGATCAGCGATTGGCTAGTTTACACCATAAGCCTGAAGAGGTTGGGAATCAAGATCTAGTTCCGGTGTCTAGATTGCTGGATAACGCTGTCAGCTCTCAACTTCCGTTTCGCGAGTACTTTCGTAGGGACGGTGAGGAAAATGAAGTGGAAGGTGTCAGTGAAGAAGATGAAGAAGGTTTAGTGGCTAGTGGTAGTACTAGTGAAGGAAATGGATCTGGAAGCGATGAAAATAAATCTGAAAATGACACGCCGAACACCGAATCCGGGAAGAAAAAGTCTGCGTATTCCCTGGCGCCAAATCGTGTAAGTTGCTCATATTGCCACCGCAAATTCCCTTGGACATCATCCTTACGTCGTCACATCTTAACACACACTGGTCAAAAACCATTCAAATGCTCTCAATGCCCTCTGCTTtttacaacaaaatcaaactGCGATCGACACCTATTGCGCAAACACGGAAACGCAACTAACCCAGAAACTACAacgaataacaataacaacaataacagTAGCAGTCAGAACTATATGATGCGAAATGTCCCTGAACGACCTTACAAGTGTTCGAGCTGTCCCAGTTCGACGTTTTCGACTTTAAGTAATTTAAAGAAACACATGAGCTGCAAACATACTGATAAAATGGACGACGCAAGACCACCAAGTCGTGAAAGTTTTGCAAGCTCCGAAGACGAACGCAAATCCGAAAATAAAAGTGATTGGGAATCCCAGATTTCGCAATCGAAACAACTAATACCGAATTCGGAATTGGGGAGTTCCAACTCAGATTTACCGTTTAAGTGTCATTTGTGCGAATGTTCATACGCAGACCGTCAAGAAGCTTTGGATCATATAAAAGATAATCACAGTCCTGAGTTTGAACTGTTGATGACGAAAGGCGCTTTAGATCAGAATCCCACCGAAGAACTCCCGCTAATTCATGATACTGAAGACGATGGTGATTTGCGAGGGAAGTTTCCGGATTACGCGAATCGAAAAGTGATGTGCGCATTTTGTATGCGACGTTTCTGGTCGGCCGAAGACTTGCGACGCCATATGAGAACGCACACGGGCGAACGGCCATTCTCTTGTGATATCTGCAATCGTAGATTCACGTTGAAACATTCAATGTTGCGGCACCGCAAGAAACATAATCTTACGAACGACGAGAATTTAGTTTCGGGGGATGAAGAACATTAtgacaaattaaaaatgaataataataataataatgtgcCGAAATCTAGCGAAGATGATTCCGGCGCTGAAGGAAATGATTTGATCGGGAATTTATTGGGTATCCGCGATAAATCAATCATCGATCAGGTGTTAGTGTCATCGGCTGATGACGCGGCGAAACTACTTGGTGTTAACCACGGTGTTAATGAATAA
Protein Sequence: MRDTAPSTPLPGPHVPLVNRLLQPASPTVVNMDDSLNNTKELQRKSDSTTDESMLETSSAISLESTHNGDSDLEPMDISKTTAIDTSDAQSDCSSPSNDYKKYFCPICDITLISQHDFTLHIRSHNNDNEIITEKGFTCRICSKVLSSSSSLDRHVLVHSGERPFKCKLCAVTFTTNGNMHRHMRTHTQKPGENYESDGSTDSNTSGNSGKTRKRRIEFNNNKLVDNSNKRKSDCFEDDDNANRRKKNFNNNNINELQKYHCPVCDREDFASLNVFETHLEDNHPEYEVSCITCNLSFKNHRALNLHRHMSHNSEQVNNINNKAKNAHLGFKDLTFVDFSSDKFPHIARYACEKSLHKPVTTQKFVCDKCVLAFPCSSALQMHQDECLKGRNHLVSNLEYPTDLSRKTSDEEIRRDNFFAHLDLQNKSPPTSPVSDDVQDSRPDIKPVIDSKDLADIQSILSMTSNGSLLQHLRTKPQTELIPLPQETIRTPEQHPEEESQDIFAAEFRKMKLRGEFPCRLCTAVFPNLRALKGHNRAHLNGNGNTGPYRCNMCPHSSIDKAALIRHMRTHNGDRPYECALCNYAFTTKANCERHLRNRHAKTTREEVKKNIIYHPSEDPTNDEINKLNASRDMKHNFLNSSTEDELPEKLINSTPIVKERMTPEIRNLILPQALGITIPPLIPKDLLPNSHSPILAIKKDLMPLRLIPKEEKLPFPFPKPPSFSYKSELPEKLEEPKIQVKCFDNLKQIPDYDTQSDDDESNHYDDHPKVDHPIDLSMDVLDLSKKKEQPKEVEDEPQDFTKRTLESAPLHPTNAAQLLLAQQLFKSRFYPNPLSLYQHPTLLPSYPYQLLFPQSFMNTQDIKERMLSLQLSGGNIINDQYSPMSNGFQALHQQAMSKMQDMNYQKDDEIKPPLHINTQLGDSVKLQSPKPKTPDMIHSPNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQFWSQRQRSGITPTGRKPTPTQTSTKPPFYELNVPNYDLSIPKLNDSLVNETKEMLPISQQVKYAILAQKLKAHSGDSNLTIPSKDEDEDALIIDEEHSRSDVHAMDFSNEHKPRSLEEKMLQLRQIREKELKLNEDQRLASLHHKPEEVGNQDLVPVSRLLDNAVSSQLPFREYFRRDGEENEVEGVSEEDEEGLVASGSTSEGNGSGSDENKSENDTPNTESGKKKSAYSLAPNRVSCSYCHRKFPWTSSLRRHILTHTGQKPFKCSQCPLLFTTKSNCDRHLLRKHGNATNPETTTNNNNNNNSSSQNYMMRNVPERPYKCSSCPSSTFSTLSNLKKHMSCKHTDKMDDARPPSRESFASSEDERKSENKSDWESQISQSKQLIPNSELGSSNSDLPFKCHLCECSYADRQEALDHIKDNHSPEFELLMTKGALDQNPTEELPLIHDTEDDGDLRGKFPDYANRKVMCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICNRRFTLKHSMLRHRKKHNLTNDENLVSGDEEHYDKLKMNNNNNNVPKSSEDDSGAEGNDLIGNLLGIRDKSIIDQVLVSSADDAAKLLGVNHGVNE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01041226; iTF_00873343;
90% Identity: iTF_00873343;
80% Identity: -