Nbre018342.1
Basic Information
- Insect
- Nebria brevicollis
- Gene Symbol
- SMARCC2
- Assembly
- GCA_944739395.1
- Location
- CALYJC010000451.1:243605-252852[-]
Transcription Factor Domain
- TF Family
- MYB
- Domain
- Myb_DNA-binding domain
- PFAM
- PF00249
- TF Group
- Helix-turn-helix
- Description
- This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.6 2.5e+03 -0.4 0.5 2 10 167 175 166 176 0.89 2 3 0.96 1.6e+03 0.2 0.0 33 44 197 208 192 210 0.86 3 3 3.9e-13 6.4e-10 39.9 0.1 3 42 595 634 593 638 0.93
Sequence Information
- Coding Sequence
- atgatagcTTTTGGACCGAAAAAAGACGGCAGTCCGAATTCGAGGTTTTATGAGTCACCCGAAACCATAACActatttgatgggattagaCAGTGGCTACTGAAAACCTGCAAAAAGTATGTGCAAGCCGACCCACCAACAAATAAGAGCTTGGCGGCTCTTGTTGTACAACTACTTCAATTTCAAGAAGACAATTTGAGTAAAAATGCATCCAAACCACTACTTATCAGGATTCCTGTTAAATGTTTCATGGACTTTAAACCAAATGGTGGTTTATGCAATATTCTCGCAACTGCGTACAGATATAAAAGTGAACAGGGTTGGCGGCGGTTCGATTTACAGAGCCCATCCCGACTGGACCGAAACACGGAAATGTTCGTTGCAATCGAACGCGCACTAGTACAAAACAAATGTCATTTAATACCGATCGTATACGTAAGATCCGAAGTAGACAAAGGAACGTATTCGAAAGCGAAAGAAATCATCAAACGCCACCAAGGTACATGGACTGAGGTTGAAGACGAAGCCACACACATACTGTACCCACATTGTGATCCATTGGAGGAAGAATATGCGCGGCCAACGATGCGCCGTGACAAAAACGTCATGTTACATTGGTATTACTTTCCCGATTCGTATGACACGTGGGTGAACACAGAACTCGGCGTTGATGTTCCTGAAAATCTAGTACACCACGTTGGACAGTGGCGCGTCAGTGTCACATGGCTGTTGGATTCGGATCAATATAACGAATGGATGACGGAAGAAGATTACGAAGTCGATGAACTCGGTCGCAAGAAAGTTCACAAATTACGTATTACAGTTGAAGATTTGATGAATCCAACCGGGGATCCAGATCGCAgtaaaaagaaacaaaaacgAAAACGTTCTCCGTCGCCACCAGTCAAACAAGGAAAACGGAAAAGTGGACGTAGTCCTGCGGTTGGTAATAAGAAACACCGGTTCGGTGACGATATCGAAACGGAAGACCTGACGAAAGATATGGATGACCCGGTGCCCGAGCCAAACGTAGTCGAAGTACCCGTACAGAAACCTTGTCCCACAAATTTAAGCAATAAGAAAGATCACGAGTTACAACCGTTGAAAGGTGGCTCGATGATGGATTTGGACGAGAGCGAGGATAAAGGTGATGATTCACAAACTGGCAAGACGAGTGACACAAATACACAAGAGTTTACGAGTAAAGACGATACTCAAGAGGATAACGTTACTGAACAGACACATCATATTGTTGTGCCGTCTTATTCAGCTTGGTTTGATTATAACTCGATACACGTGATTGAGAAACGCGCGCTTCCTGAGTTCTTTAACGCGaaaaataaatcgaaaacaCCTGAAATTTATTTAGCATACAGGAATTTCATGATTGACACTTATAGGTTGAATCCTACAGAATATATTACAAGTACTGCGTGCCGACGAAATTTGGCTGGGGATGTGTGCGCGATAATGAGAGTGCACGCATTTTTGGAGCAGTGGGGCCTCATCAACTATCAAGTAGACACCGATTCGCGACCTACGGCCATGGGCCCACCACCAACATCCCATTTCCACGTACTCTCTGACACACCATCCGGATTACAACCAGTCAATCCACCAAAAACCCCACAGCCAAGCGCAGCAAAATCGTTGCTTGATTTGGATAAAAATGACGCGAAACGAATTGACAATGACCAACCAATGCAATTTGGATTAAAGCTTGACCAATACGTTAGAAAACCAGCCGCAATGCGGAATAAAACAGCTGCATCATTGACGAGAGATTGGACGGAACAAGAAACGTTATTACTCCTTGAAGGTTTAGAAATGTATAAAGATGACTGGAATAAAGTGTGCGAACATGTTGGTACACGCACACAAGATGAATGCATCCTCAATTTCCTACGATTGCCAATTGAAGACCCCTATTTAGAAGATCATGAAGCAGGTGGAGTACTCGGACCGCTAGCATATCAACCTATTCCATTTAGCAAAGCAGGGAATCCAATCATGTCCACGGTTGCCTTCTTAGCATCTATTGTTGATCCTCGAGTAGCTGCGGCTGCAGCGAAATCCGCAATGGAAGAGTTTGCCAATATAAAAGATGAAGTCCCGGCTGCGTTACTTGATGCACATTTGAAAAACGTCGAAGCATCCTCAACCGAAGGGAAATACGATCCAGCGGCTGGTCTCGCTAGCAGCGGTATCGCTGGTACACTgccagaaaaagaagaagaagagaAACTAAAGAAGGATTCCGAAATAAAAGATGAAGAAATCGAGAAGCCTGTAAATAGCACTGAATGCACCGACCAGAAGAAAAATGGTATCGAGAGATCGGAACCTATGGAAACGGATAAACCTGACGAAAAAGTGAAACTTGATGTTGCTGTTATAGTGAAAGAAGAAACTAGATCTGAATGCGGAGGAACTCAGCCTAGTATTAAAGAAAGCGAAGAAATCGCaacaaataatgaaattgaacCGGTTGTTAAAACCGTCAAAGATGCACAGATGCAAATGGCAGCCGCTGCAGCGCTGGCGGCTGCAGCTGTTAAAGCTAAACACTTGGCTGCGGTAGAAGAAAGAAAAATCAAATCGTTAGTAGCATTACTAGTCGAAACTCAAATGAAAAAACTTGAAATCAAATTGCGTCACTTCGAAGAACTCGAGACGACAATGGAACGAGAACGAGAAGGCCTTGAATATCAACGACAACAGTTAATAACCGAACGGCAACAATTTCATTTGGAACAATTAAAAGCAGCTGAATTCCGAGCACGACAACAGGCGCACCAGCGGCTACAAGCGGAACAAGGTGGTGGACAATGGCACCAACCAGTGGCCCATCCTCCAGGTTCAACTCCAACTGCTCCCAACACTGCAGGTACGACCAGTTCTCAATTGACAAATATGCCACAAGCAAACGACGCAAATCCGACGTCGACCCCTACACCTCCTTCGCCTCAGGCTGCCGTGGTGACCAATCCGCCTGTGCCGCACCAAGTGTCTATGTGA
- Protein Sequence
- MIAFGPKKDGSPNSRFYESPETITLFDGIRQWLLKTCKKYVQADPPTNKSLAALVVQLLQFQEDNLSKNASKPLLIRIPVKCFMDFKPNGGLCNILATAYRYKSEQGWRRFDLQSPSRLDRNTEMFVAIERALVQNKCHLIPIVYVRSEVDKGTYSKAKEIIKRHQGTWTEVEDEATHILYPHCDPLEEEYARPTMRRDKNVMLHWYYFPDSYDTWVNTELGVDVPENLVHHVGQWRVSVTWLLDSDQYNEWMTEEDYEVDELGRKKVHKLRITVEDLMNPTGDPDRSKKKQKRKRSPSPPVKQGKRKSGRSPAVGNKKHRFGDDIETEDLTKDMDDPVPEPNVVEVPVQKPCPTNLSNKKDHELQPLKGGSMMDLDESEDKGDDSQTGKTSDTNTQEFTSKDDTQEDNVTEQTHHIVVPSYSAWFDYNSIHVIEKRALPEFFNAKNKSKTPEIYLAYRNFMIDTYRLNPTEYITSTACRRNLAGDVCAIMRVHAFLEQWGLINYQVDTDSRPTAMGPPPTSHFHVLSDTPSGLQPVNPPKTPQPSAAKSLLDLDKNDAKRIDNDQPMQFGLKLDQYVRKPAAMRNKTAASLTRDWTEQETLLLLEGLEMYKDDWNKVCEHVGTRTQDECILNFLRLPIEDPYLEDHEAGGVLGPLAYQPIPFSKAGNPIMSTVAFLASIVDPRVAAAAAKSAMEEFANIKDEVPAALLDAHLKNVEASSTEGKYDPAAGLASSGIAGTLPEKEEEEKLKKDSEIKDEEIEKPVNSTECTDQKKNGIERSEPMETDKPDEKVKLDVAVIVKEETRSECGGTQPSIKESEEIATNNEIEPVVKTVKDAQMQMAAAAALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETTMEREREGLEYQRQQLITERQQFHLEQLKAAEFRARQQAHQRLQAEQGGGQWHQPVAHPPGSTPTAPNTAGTTSSQLTNMPQANDANPTSTPTPPSPQAAVVTNPPVPHQVSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00768182;
- 90% Identity
- iTF_01040802;
- 80% Identity
- -