Nbre011105.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nebria brevicollis
Gene Symbol
jarid2b
Assembly
GCA_944739395.1
Location
CALYJC010000183.1:1137086-1142580[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 2.8e-22 7.5e-19 68.8 0.0 6 89 1083 1163 1078 1163 0.92

Sequence Information

Coding Sequence
ATGGTTGTAAGTCGGAATGATGTCAAGCGCAAGAGAAAAGATAGTGATACCACAGTTGATACTCTTCCAGAGAGCCCTAAAAGGACTAAAGTTCATGCCCAGAGAAAATTCGCACAGGGCTCAAACGTAAGCAGCCCTGTAATAACACCAGTCAAAGAAATAGATAGGGACAAAGTTAAAATCGACGTACTTCCAACACCCTCAGAACTGTTACCGATTAAACGACCAAACACCGAAGACTTCCTAACATTTCTCTGTTTTCGCGGCACACCAATACTACcaccaaaattaaattacttcaACACCACAAGCACCCTAGCCTCCCAAAATGTCGCAACAGAAACAGAAGCGAAAACAAACGAAGCCACAACAGCTTCAACAACAAACGACAGTCAAGAGAACGAGTCATCCGAGCGACCATTCATTGCATTCGGCGTTCGAAAACGAGCGGATCCATTCATAAATAACAAACTAGAGAAAAAGCGACGACATGCAATTGCTCTACAGGCCTTACGGCGCAAATACCAAGAACAACGTATGGCGAAAATCCGCGCGGTTACAATCGAAAAAATGTCGGAgggaattaaaattaaaagtaaaaactTGGTACAAACTCGGTCGGTTACGAAACAAGTGCGACAAGCAGCACCAACCGAGAAGCGAAAACTTAAAGTTGTTACAAAACgcgttaaaataacaaatagaaCGGCTGTTAAAAGacctattttaaaacaaaaaatgtgtttgagAAGTCGCACCCGTTTATTACCTAGAGATATACCAGTTCCAgtgaagaaaaaaattactaaagtTGTAATTCCAACCAAAATTCAAACAGTTAAAAAAGATAGCTCCTCTGAATTTTCATCAGATGATGATCAACCTCTAGtcaaaactattaaaaaacCAACAAAGCCAGTAATTAAAACAACGCCGCAATTAGTTCGCAAAATTCCTACGTCGAAAAAAGCGAATTTAATCCGTCTGACGCGCAGCACTCAACCATCAATGCGTTTAGAAACGCACACTGCACGTCCGATTCGATTAGAATCTCACACAACGCAACGTCCGTCGCGAAAGACGAAAGAAGCCGCTGCTCTTTATATGGAATTGTTAGGCCGTAAACTGGTCAATGATGCCGAAGTCGATGAAGACAATGCTTCGATTGATAGTTTCCCGGAATTGCCAAACGTACGACGTACAGAACAACGCGAAAacgaaatgaaagcaaaagtGAAAACTACGAAAGTAGGTAAAATTAACACACGTAAAATGTCGGCAACTATTAAAGAAAAACTTCAAGATAAgtgtaacaaaaataaaccgaaattaatcaaaaaaccCGTCGAAACACTTATTGAAACCGACGTCGAGAAAATTGTGGAAAAAGAGGAAGTTGAggagaaagaaacaaaaaaagtGTTGCGTTCAAAAGTTGATCGTAAAACGAATACGCAAAAAGCAAAGACAGAGAAAACGATTATTGCAGCAACAAAAAATGTTGATAGTTTTAGCGATTCTGATGAGGAACCACTAGTGAAATTAACAATTCAAAAGAAAGTATTGAAAACGTCTAAAAAGCCTACACCCCTAATTGCAGATTCAAAAATATCTCTAGTTAAGAAAGTTGAATCAAATTCAAAGACTTGTTCAATgataaagaaagaaacaaaaattgtgCCAAAATTAGAATCAGACGATGAGGAAAAAGCATTTAGAGGATTTATTAAAACTGATGAagttaaaactattaaaaagaTACAGGAAACAAATTCCACTTCTGAGATTACTTCTTCACCTTGTGCCGATCTTCTCTGCAAAGATATTGGACGTCGTTTCGGTAAAGGGAAAGTTAATATGTCAACGGAACAAATCGAGAAATGGTTAAAAGACAGCGCATTAGCAGGCGAGTGTATCAAAAAAGAAGAGTTTGAAAAGAAGTATGAAGATGATATATTGAAGTATGAAGAAAAGGATGAATGTAAATCTGATAGTAAAGCAAGTACAATCGAATCACCTATTGTAAAAATTGTTCCGCAGTCGAAAGCTAGGGCAATTAAAGTGACTCCAAAATCAAAGAAAGTATTAAAAACATCGCCTGTACAAAGTATAAAAACATGCACGATTACcccaataacaaataaaatccaGTTGGCAAACGAGCGTAAATACACATTTCAACAACGTCGTTCGATTTTAAGCAAAGATCGGAAAGATATATCGCCGAATACCAAAGCGTTTTCACCGGATAATGAAAGTAGTGTCTACGCATTTGAAGCAGAAATGGAGATGCCTGTTAACACTCCATTTAGAAGCCATGTCCGACGACCTTCCAGTACAGCAACATCTCGTTCGGAAGATGAAGTAATAAAAATCGAGGATGAAGATCGACGAAAGTCACATGACGGGAAATTCAGATTGCCTGCAGTTGTGAAAACAACTAAAAAACAAGAAGTCTCCTTGACGCTCTCCGCAGATGAAGCCAACAGTGCTTCAATAGCGGTACAAGTAAACTTAGATTCGACATTCGGGGAAAGTAGTATGGAGTGTTCAACGCAAACCGACGCTGGAGAAGATGAcggtcatttattttatataccattgCAACCTACTTCTAAAACAACCAATGCACATATAATACAAGGCGTTGCTGTGAAGTTGGGAACTGAAGGTTCTGATGGACTCAATCAACGTGTAGTAATGCGAGCGAAATTAGTCACCGATCGGTTACCTATAAAACCCTTAGCCCAATCAACAAATATGTATCCTCCAATTGGAACAGTTCAACCCACTTACCGTTCGCGATTTGAAttatcaaaaccaatcggcaaAACAATGCTGGAACTGAAATGTGATAATTTCAGTACTGATAGTAAAGTAACAGTGCCAAGTTCGCCAAGCGCGTCTTCATCATCGAGTACTAAAATCTATAAACGTGCTGTAAAACCTCGAGCTCGATCGTTGGATATGTGTTTGCCCATAAATAATACTGAATTCCCTGGTTCGAATCAACCTGCACAACTGGTTGAAGCCCCGACGTTTCATCCGTCCGAACGCGAATTCCAAGATCCGATTGAGTTCATTGAAAAGATTAGGCCGTACGCGGAAAAGTTTGGAATCTGTCGGATTATTCCACCAGCGAATTTCAAACCAGAGTGTAAAGTTAGTGATGATATGAGGTTTACTGCGTATAATCAGTACATCCATAAAATGCTGCATCGATGGGGTCCCAATTTTAAAGAATTTATGGCCATCAAGAAATACTTAGCAACCCAAAGTATCACATTCACACATCCACCATGGattggTGGTATGGAAATCGATCTACCGAGACTCTACCAAACTGTTCAATCACTTGGTGGTTTAAAAGAAGTTATAGAAAAGAAACGTTGGCCTAGAGTGGCGGAAGGTATGAAAATACCAAAATCCGCCCAAGATCGGGTCACAAAACTAGatgatatttattgtaaatactTACTGCCCTACGACACTTTATCACctgCTGAACGTCAAAAACTCTTCGACGACGTTGAAACAGAATGGGCAAAACGGGAATCGCGCAATTTGTTAAGATCCCAACAGCAAAACAGCACCAATGTATCCGTAGTAAATTCAAATGACTCTGATTCGGAGTCAGGTGATGAAGAGACCGACGAATGCATGGTGAAAGGACGCAACATGGCGCTAAACGCGTTTTACCGTATTGCTAGGAATACAATGAGCATGTGGTTCAAATCATCTGAACCAAGTGCTCAAGAAGTTGAACAAGAATTCTGGAAACATGTCACTACAAGACAGAATCATTTATGCGTTAATTCGGGCTCAATTGATTCAAGTGGTTGGGGCTATGGGTTTGCAAGTAGTAAAAATAGTCCTTTCGGTAAACATCCTTGGAATTTGAAGATTCTCACGAATAATAGTGGATCAGTTTTACGAACAATGGGACCAATCATGGgtGTAACAGTTCCAACACTTCATGTCGGTATGGTATTTAGTGCATGTTGTTGGTACCGGGATCCGCACGGCTTACCATGGATCGAATATCTACATACAGGCGCCAATAAAATCTGGTACGGTATACCTTCTTCGTTAAGCGACCTCTTCCGGGCAGCGTTAACAAAAATCGTACCAAGTTATTGTCGCAACAAAACCTTATGGTTAACATCCGACACAGCAATGGTACCGCCGAGTTTACTAGTTCAAAATGGTGTTAGCTTATGTCGAACAGTCCAAGAACCTGGTCAATTCATAATAGTTTTCCCGCGTGCATTTACATCTAGTATTTGTAGTGGTTACGTAGTATCTGAAAGTGTATATTTCGCGCCGCCGAGTTGGTTGCAAACCGCACAGCAAGCGTTCAAAGACATTCGGGAAAGTTGTGAATCGTCCATGTTCTCGTTTGAACGTTTGTTGTTGAGTATTTCCACGGATTCGCGATCGAGTTCAGATGTTTTAAAGCGAATCCTGCCAATTATGTTAGAATTAAAAGCACGTGAACAAGACGGCCGCGAGAAATTGAATGCGCTTGGATTGAAAATGATGGAGCGTTTACCGAATTCTAGTAATGCTAACgcgaagaagaaaaagaaaatacaagAAGATGATGGCGAATATGAGTGTGAAATTTGCCGAAGTAGTCTATACGTATCTCTAGTCATTGATTCTCAAGAAGAAGGCGTCTTTTGCCTAGAACACGCCATTGACCACATCAAATCTAAACCCGATCAACTAAAAcattgcaaattattattcacTTACGATACACAAGACCTTGATAATTTACTggagaaaattaaattaaatatcgaAACAAAATCTATTAAGCGGCCAGGTAAAGTAGCATATAAGGTTCCAATCTctttacttaaataa
Protein Sequence
MVVSRNDVKRKRKDSDTTVDTLPESPKRTKVHAQRKFAQGSNVSSPVITPVKEIDRDKVKIDVLPTPSELLPIKRPNTEDFLTFLCFRGTPILPPKLNYFNTTSTLASQNVATETEAKTNEATTASTTNDSQENESSERPFIAFGVRKRADPFINNKLEKKRRHAIALQALRRKYQEQRMAKIRAVTIEKMSEGIKIKSKNLVQTRSVTKQVRQAAPTEKRKLKVVTKRVKITNRTAVKRPILKQKMCLRSRTRLLPRDIPVPVKKKITKVVIPTKIQTVKKDSSSEFSSDDDQPLVKTIKKPTKPVIKTTPQLVRKIPTSKKANLIRLTRSTQPSMRLETHTARPIRLESHTTQRPSRKTKEAAALYMELLGRKLVNDAEVDEDNASIDSFPELPNVRRTEQRENEMKAKVKTTKVGKINTRKMSATIKEKLQDKCNKNKPKLIKKPVETLIETDVEKIVEKEEVEEKETKKVLRSKVDRKTNTQKAKTEKTIIAATKNVDSFSDSDEEPLVKLTIQKKVLKTSKKPTPLIADSKISLVKKVESNSKTCSMIKKETKIVPKLESDDEEKAFRGFIKTDEVKTIKKIQETNSTSEITSSPCADLLCKDIGRRFGKGKVNMSTEQIEKWLKDSALAGECIKKEEFEKKYEDDILKYEEKDECKSDSKASTIESPIVKIVPQSKARAIKVTPKSKKVLKTSPVQSIKTCTITPITNKIQLANERKYTFQQRRSILSKDRKDISPNTKAFSPDNESSVYAFEAEMEMPVNTPFRSHVRRPSSTATSRSEDEVIKIEDEDRRKSHDGKFRLPAVVKTTKKQEVSLTLSADEANSASIAVQVNLDSTFGESSMECSTQTDAGEDDGHLFYIPLQPTSKTTNAHIIQGVAVKLGTEGSDGLNQRVVMRAKLVTDRLPIKPLAQSTNMYPPIGTVQPTYRSRFELSKPIGKTMLELKCDNFSTDSKVTVPSSPSASSSSSTKIYKRAVKPRARSLDMCLPINNTEFPGSNQPAQLVEAPTFHPSEREFQDPIEFIEKIRPYAEKFGICRIIPPANFKPECKVSDDMRFTAYNQYIHKMLHRWGPNFKEFMAIKKYLATQSITFTHPPWIGGMEIDLPRLYQTVQSLGGLKEVIEKKRWPRVAEGMKIPKSAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDDVETEWAKRESRNLLRSQQQNSTNVSVVNSNDSDSESGDEETDECMVKGRNMALNAFYRIARNTMSMWFKSSEPSAQEVEQEFWKHVTTRQNHLCVNSGSIDSSGWGYGFASSKNSPFGKHPWNLKILTNNSGSVLRTMGPIMGVTVPTLHVGMVFSACCWYRDPHGLPWIEYLHTGANKIWYGIPSSLSDLFRAALTKIVPSYCRNKTLWLTSDTAMVPPSLLVQNGVSLCRTVQEPGQFIIVFPRAFTSSICSGYVVSESVYFAPPSWLQTAQQAFKDIRESCESSMFSFERLLLSISTDSRSSSDVLKRILPIMLELKAREQDGREKLNALGLKMMERLPNSSNANAKKKKKIQEDDGEYECEICRSSLYVSLVIDSQEEGVFCLEHAIDHIKSKPDQLKHCKLLFTYDTQDLDNLLEKIKLNIETKSIKRPGKVAYKVPISLLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01040638;
90% Identity
iTF_01040638;
80% Identity
-