Nrib000035.1
Basic Information
- Insect
- Nasonovia ribisnigri
- Gene Symbol
- -
- Assembly
- GCA_027563275.1
- Location
- JANEHQ010002073.1:11356-14028[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.056 1.9e+03 -0.0 0.1 26 44 133 151 116 157 0.86 2 13 1.9e-05 0.63 11.1 0.0 20 44 183 207 176 215 0.88 3 13 0.013 4.1e+02 2.0 0.0 21 45 212 236 207 243 0.85 4 13 0.0074 2.4e+02 2.8 0.0 26 43 273 290 267 295 0.88 5 13 0.00024 8 7.5 0.0 21 45 296 320 292 327 0.87 6 13 0.021 6.8e+02 1.3 0.2 21 44 324 347 320 357 0.83 7 13 0.065 2.2e+03 -0.3 0.1 19 44 350 375 344 384 0.81 8 13 0.28 9.3e+03 -2.3 0.0 26 44 385 403 377 411 0.78 9 13 0.0044 1.5e+02 3.5 0.0 21 44 408 431 403 439 0.85 10 13 0.0089 2.9e+02 2.5 0.0 21 46 436 461 434 469 0.84 11 13 0.01 3.3e+02 2.3 0.0 26 47 469 490 463 496 0.83 12 13 0.023 7.7e+02 1.2 0.1 21 44 492 515 487 524 0.82 13 13 0.04 1.3e+03 0.4 0.0 18 43 517 542 512 546 0.85
Sequence Information
- Coding Sequence
- ATGGTACCAGTAAGAACAACTATTATTGATAGCTCGATAAATTCCAAGTATGATAAAAAATTTAAAGTAATTATCAAACAAGAAAATGTTATTGCCATTGATGATCAAGCATCTAATTTAGTTATAAAACATGAAAACATTACTGTCATTGATAATCATGTATTTAATGGAGTTATTGAACAAGAATGTTCTGATGGAATAGATTACAACAATGATAGTCAATTATTGCACATAGGAACTTTAAGAAAAACTGAAGCAAACCCAATTGATACCGAAATAAAAATTGAAAAAGATTTTATTAACGGTTATGAATTTGAAGGAACATTTAGTAGGGAAAGCCATATTCCAGAACTAACAAATTGTATCCAGAAATCTAACTTCAGAAaaaaagaatttgtttgtgacatttgttctaaatcatttcataataaatcacgattgagaaaacatatacctgttcatactaggaaagtattccgcagtactaaagtatgtaataaatcatatcataagcaagaccatttcaaaagacactttaaaatgcagaagagtgataagccattaacatgtgatatctgtggtcaaacttttaataaatcatcaaatttaaaagcgcataaaaggacacatactggagaaaaaccatttaaatgtgttatttgtagtagagatttctctcagaaatcaagtttaaaagtacatatgacgagacacaatggagaagaatcttttaaatgtgatatatgtaataaaacatttaatctgttatcaactttaaaatttcatattatgacacacgatgtaaaaaaatcttttaaatgtgatatctgcaataaagcatttaaacagtcaacagctttaaaatctcacaacatgatacacaccggagaaaaaccttttaaatgtgatatctgtggtcgaacttttaataaatcatcaaatttaaaaacgcatataaggacacatactggagaaaaaccatttaaatgtgttatttgtagtagaggtttttctcacaaaacaaatttaaaggtacatacaagaagacacaccagagaaaaatgttttaaatgtgatatctgtaataaagcctttaatgcgttatcaaatttaaaatttcatattatgacacatgccagaaaaaaatcttttaaatgtcatatctgtaataaagcatttaatctgtcaacagctttaaaagctcataacatgatacacaccggagaaaaaccttttaaatgtgatatctgtaataaagcatttaatctgtcaaaagctttaaaagctcataacatgatacacaccggagaaaaaccttttaaatgtgatatctgtaataaagcgtttaatctgtcaacagctttaaaagctcatcacaagatacacaccggacaaaaacattttaaatgtgatatctgtgttcatactttttataattcatcaaatttaaaagcgcataaaaggatacatactggagaaaaaccatttaaatgtattatatgtagtagagagttttctcacaaaacaaatttaaaggtacatacaaggagacacaccggagaaaaaccttttaaatgtgatacctgtaaaaaagcgttttgtcattcaaatgctttaaaagctcacacgaagacacatatagtgtaa
- Protein Sequence
- MVPVRTTIIDSSINSKYDKKFKVIIKQENVIAIDDQASNLVIKHENITVIDNHVFNGVIEQECSDGIDYNNDSQLLHIGTLRKTEANPIDTEIKIEKDFINGYEFEGTFSRESHIPELTNCIQKSNFRKKEFVCDICSKSFHNKSRLRKHIPVHTRKVFRSTKVCNKSYHKQDHFKRHFKMQKSDKPLTCDICGQTFNKSSNLKAHKRTHTGEKPFKCVICSRDFSQKSSLKVHMTRHNGEESFKCDICNKTFNLLSTLKFHIMTHDVKKSFKCDICNKAFKQSTALKSHNMIHTGEKPFKCDICGRTFNKSSNLKTHIRTHTGEKPFKCVICSRGFSHKTNLKVHTRRHTREKCFKCDICNKAFNALSNLKFHIMTHARKKSFKCHICNKAFNLSTALKAHNMIHTGEKPFKCDICNKAFNLSKALKAHNMIHTGEKPFKCDICNKAFNLSTALKAHHKIHTGQKHFKCDICVHTFYNSSNLKAHKRIHTGEKPFKCIICSREFSHKTNLKVHTRRHTGEKPFKCDTCKKAFCHSNALKAHTKTHIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01038652;
- 90% Identity
- iTF_01038652;
- 80% Identity
- iTF_01038652;