Basic Information

Insect: Nasonovia ribisnigri
Gene Symbol: -
Assembly: GCA_027563275.1
Location: JANEHQ010000842.1:103206-106280[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 4.6 5.5e+02 2.2 0.7 2 10 122 130 121 132 0.91

2 17 0.045 5.3 8.5 0.1 2 23 145 164 144 164 0.85

3 17 0.0075 0.89 11.0 0.2 1 23 176 199 176 199 0.98

4 17 0.32 38 5.9 0.5 1 20 244 263 244 265 0.94

5 17 0.56 66 5.1 1.5 3 17 272 286 271 292 0.76

6 17 0.16 19 6.8 0.6 2 23 303 325 302 325 0.94

7 17 1.6e-05 0.0019 19.4 0.4 2 23 332 353 332 353 0.97

8 17 0.0025 0.29 12.5 0.5 1 23 359 381 359 381 0.95

9 17 8.3e-05 0.0099 17.1 2.3 1 23 387 409 387 409 0.99

10 17 0.69 82 4.8 0.2 1 23 420 443 420 443 0.88

11 17 0.077 9.1 7.8 0.9 2 23 466 488 465 488 0.92

12 17 0.0053 0.63 11.5 1.5 1 23 499 521 499 521 0.97

13 17 0.093 11 7.5 3.0 1 23 594 617 594 617 0.97

14 17 0.041 4.8 8.7 0.7 1 23 630 653 630 653 0.94

15 17 1.2e-05 0.0014 19.8 2.5 1 23 663 685 663 685 0.96

16 17 0.19 23 6.5 0.0 2 23 760 781 759 781 0.95

17 17 0.0056 0.67 11.4 0.1 2 23 794 815 793 815 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	4.6	5.5e+02	2.2	0.7	2	10	122	130	121	132	0.91
2	17	0.045	5.3	8.5	0.1	2	23	145	164	144	164	0.85
3	17	0.0075	0.89	11.0	0.2	1	23	176	199	176	199	0.98
4	17	0.32	38	5.9	0.5	1	20	244	263	244	265	0.94
5	17	0.56	66	5.1	1.5	3	17	272	286	271	292	0.76
6	17	0.16	19	6.8	0.6	2	23	303	325	302	325	0.94
7	17	1.6e-05	0.0019	19.4	0.4	2	23	332	353	332	353	0.97
8	17	0.0025	0.29	12.5	0.5	1	23	359	381	359	381	0.95
9	17	8.3e-05	0.0099	17.1	2.3	1	23	387	409	387	409	0.99
10	17	0.69	82	4.8	0.2	1	23	420	443	420	443	0.88
11	17	0.077	9.1	7.8	0.9	2	23	466	488	465	488	0.92
12	17	0.0053	0.63	11.5	1.5	1	23	499	521	499	521	0.97
13	17	0.093	11	7.5	3.0	1	23	594	617	594	617	0.97
14	17	0.041	4.8	8.7	0.7	1	23	630	653	630	653	0.94
15	17	1.2e-05	0.0014	19.8	2.5	1	23	663	685	663	685	0.96
16	17	0.19	23	6.5	0.0	2	23	760	781	759	781	0.95
17	17	0.0056	0.67	11.4	0.1	2	23	794	815	793	815	0.93

Sequence Information

Coding Sequence: ATGCCGGACAACGTGGGACCTCCGAAACCCTGTCCCGGAAAGATAGATTTTCGGAAACTCCGGAAACGTCGCCCCTACGTCGCGTTGCGTCGTCATCGAACGTCGTTTGACCTGACTAATCAAGTGATCGTTTACTTCGAACCCGACGGCAGCGGGAGATGCGAAGTGGTCGGCGGCGCCGGTGACGAGGAGTCCTCCGAGGGTCACAAGTCCGTCGGACGCGCCGTGGACGCGAACCGCAAGGGCAGGCCCAAGGGATCGAAGAACAAGTCTCGGACGTCGCCTTCGTCGCCGTCGCTATGCGGCTCGTTCAACTACCGATGCGAGAAGAGGTCGCTGACGTACACGTTCGCTGGCCCGGTCAAGTGCAAGTCCTGCGATCGCACGTTCGACGGTGACCCTGTGGCCCACTGTCAGGAGCACCACAGGTCCGTGTGTCCCATATGCGGCCGCACGTACCGGCCACCGCTGAACACGCACATCAAGTCTCACGGGACCCGACACGTTTTGCTGACCGTTTCGTGTTACGAGTGTTACGTGTGCAAGGAAAAGTTCGGAAACACGCCGACCATGGCCGAACACTTGCGGACCGAACACCGAGATGTCGCCGTCACTGCCGAGTGTTCGCTGTGTGGCGACACCGCCGCCGAGTTCGCGACAGTCGATGCGGCCGTCGACCACCTAGTGGACGCGCACTGTCCGCGCAAGAAGTTCAGCCACCCGACCGTGTATCGGTGCCGGGTGTGTCTGGCCGGGTTCAAGAGCCAGATCAACGTGCTGCGGCACGCGTGCAACAAGATCAAGTCACCGCATTGCGCGCAGTGCGGAAAGACGTTCCCGTCCAAGATGCGGTACGCGTTCCACCTGCAGTTCCACGAGCACCCGAAGTGGGCGACCATGCACTTGCACTGCGACTTATGCCTGGCCGAGTTCGACGACGAGTACCAGCTGTACGATCACATCCGGTTCCGACACGAGCTGCACGACAAGGCGGTGTGCGAGGTGTGCGGCCGGACGTTCAAGTCGTCCATGGGCCTGAACATCCACCGCCGGTATCACAACGGGTCCCGGGACTTTGCGTGCGGGTCCTGCGACAAGTCGTTCCTGAACAAGTCCACGCTCCGGGAGCACGAGATCTCGCACATGGACGTCAAGCCGTTCCAATGTCACATATGCGGACAGTATCTGAGCCGCGCGTCCAGGCTCCGGTCGCACGTCAAGACCCACCGGGCCGCCGAGTCGACCGACCAGCTGTGCTACTGCTGCGTCCATTGTGGCTACGTGGCGCCCAACCCGACCGCGGTCGCCGAACACGTGGGCAAGCAGCACTGCGACGACACCGCACACCCGACGGCAAATATCGAGTGTTACGCACTGCAACTGTCGTCGGTGGTCAAGTGCGAGTACTGTGACTCGACGTACCTGAACTCGGCACACCTGAACACCCACCGAGAAGCGTCGCACGCGTTTGGAGGGGCCGGCAACGCCGAACCGTTCATCTGCGTGGTGTGTTCGTCCACGTTCAGCACGTACTCCCGGCTGACCACGCACAAGCTAACGCACGGAATCAACATGGATTCCACATGCAGCGCGCCCGTTCAACAGCAGCAACCCGACCAGGACGATCTAATGCACCCTGCAGACTTGCTGGACGACTCGGTGTCGGATCGGTTTGAAATACCGCAGTTTTTCTCGTGCGAGTACTGCTCCAAGATGTGCTTGCACTACACGTACTTTTGCCTGCACCGGCGACTCAAACACCCGCCCGGCGTGCAGACGCACACGTGCGAAAGGTGCTCGGTGGACTTTAAAACGTCCTGGAGACTGTCGTACCACAGGAAGACCGTGCACGGGCAACCGGCGGACGAGAACAAGCCGTCCGAGAAGTTCAACTGTACCGTATGCTCTAGGCAGTTCGTCAAGATCGGCGCGCTCAACTTGCACAAGACCCGCACGCACATCGACGTGGTCGGCGACGTGTGCAAGTACCTGTGCCACCTGTGCGGCAAGTTTTTCAGCTCCGAGTTTTCGCTCAGGGCGCACGTTAAGACGCACGAATTCGGCACAGGTGGTTTGCTCGCCACCGCACAGACGACAGTACTCGGCGGCTGCACCGGCAAAGACGATCGCCCACTCGTCGACAACCATTGCGACCGCTCCGAACACTCTGCGATGGCACCGGCGCCGCAGACAGGTCAAATCCGGCCGAATCAACGGCGCCGCACGTACCGGAAACCGATGGCCACCGCCGCCTGTTTGACGACGCCGGTCGCGAAATCGTGTCCGTACTGCACCCTGACGACCGACGACGAGGCGGCGTTCATCGAGCACGTCAACGGTCACATCCGGTACTCCAAGCCCGTGTTGCCGGCGGGCACCGTTTGCGAGCTGTGCGACGCGAGTTTCGGTGACGCTACGCAACTCAAGTACCACCTGGACGACCACGTGAACGCGAACCAAGCTCTCCTGTGCCGGGCGTGCTACTCGCCGTTCCTGTCGTCGGCCGCGCTCGACGTGCACGTAGCCAAGGAATGTTCGTCCGCGACGATGCTGGTCGACTACGCGTCCACCGCACCGGCCGTCCCGCCACGAGTGGAGTTCGTCTGCCCGTCCACCGCCCCGCCAGAAGTCGAGTCTGTCAGCCCAACCACCCCGCCCGAAGTCAAGTTTGTCAGCCTACCCGTCTCCACCCCCGATGTCAAGTTTGTCAGCCTACCCGTCTCCACCCCCGATGTCAAGTTTGTCAGCCTACCCGTCTCCACGCCCGATGTCAAGTTTGCCGGGCCGTCCGCCACCCCGCAGTCCGACGCCCGTCCTGCGCTGATCGTCGACTGTTCGCAGATCTTCAAGGGCAAGGGCGTCGCCGACGATGGGTCATCACCTCAGAAATCGGCCGAACTGCCGGTCGAGCCGAACGCCGACGACAATAGATCACTGGAATTGGCCGTGCTCGACGAGCTCTTGTCCATAATGTCCACGCCCCGCACGTTGGTCGCCATGGATTCGATCGACTACCAACCGCCGGACGACATGTCGTTGGACGCGATTTTCGACAGCATCTCCACCACGGACTGA
Protein Sequence: MPDNVGPPKPCPGKIDFRKLRKRRPYVALRRHRTSFDLTNQVIVYFEPDGSGRCEVVGGAGDEESSEGHKSVGRAVDANRKGRPKGSKNKSRTSPSSPSLCGSFNYRCEKRSLTYTFAGPVKCKSCDRTFDGDPVAHCQEHHRSVCPICGRTYRPPLNTHIKSHGTRHVLLTVSCYECYVCKEKFGNTPTMAEHLRTEHRDVAVTAECSLCGDTAAEFATVDAAVDHLVDAHCPRKKFSHPTVYRCRVCLAGFKSQINVLRHACNKIKSPHCAQCGKTFPSKMRYAFHLQFHEHPKWATMHLHCDLCLAEFDDEYQLYDHIRFRHELHDKAVCEVCGRTFKSSMGLNIHRRYHNGSRDFACGSCDKSFLNKSTLREHEISHMDVKPFQCHICGQYLSRASRLRSHVKTHRAAESTDQLCYCCVHCGYVAPNPTAVAEHVGKQHCDDTAHPTANIECYALQLSSVVKCEYCDSTYLNSAHLNTHREASHAFGGAGNAEPFICVVCSSTFSTYSRLTTHKLTHGINMDSTCSAPVQQQQPDQDDLMHPADLLDDSVSDRFEIPQFFSCEYCSKMCLHYTYFCLHRRLKHPPGVQTHTCERCSVDFKTSWRLSYHRKTVHGQPADENKPSEKFNCTVCSRQFVKIGALNLHKTRTHIDVVGDVCKYLCHLCGKFFSSEFSLRAHVKTHEFGTGGLLATAQTTVLGGCTGKDDRPLVDNHCDRSEHSAMAPAPQTGQIRPNQRRRTYRKPMATAACLTTPVAKSCPYCTLTTDDEAAFIEHVNGHIRYSKPVLPAGTVCELCDASFGDATQLKYHLDDHVNANQALLCRACYSPFLSSAALDVHVAKECSSATMLVDYASTAPAVPPRVEFVCPSTAPPEVESVSPTTPPEVKFVSLPVSTPDVKFVSLPVSTPDVKFVSLPVSTPDVKFAGPSATPQSDARPALIVDCSQIFKGKGVADDGSSPQKSAELPVEPNADDNRSLELAVLDELLSIMSTPRTLVAMDSIDYQPPDDMSLDAIFDSISTTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00942171;
90% Identity: -
80% Identity: -