Basic Information

Insect: Nasonovia ribisnigri
Gene Symbol: SCRT1
Assembly: GCA_027563275.1
Location: JANEHQ010001793.1:2041-10577[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00032 0.038 15.3 4.7 3 23 136 156 134 156 0.97

2 14 0.0021 0.24 12.7 0.3 1 21 213 233 213 234 0.92

3 14 0.00027 0.031 15.5 0.8 1 23 246 268 246 268 0.99

4 14 0.0073 0.87 11.0 6.4 2 23 275 296 274 296 0.97

5 14 8.4e-05 0.01 17.1 0.2 1 23 302 324 302 324 0.98

6 14 1.7e-05 0.0021 19.3 1.4 2 23 331 352 330 352 0.97

7 14 0.00052 0.062 14.6 0.4 1 23 427 449 427 449 0.98

8 14 1.6e-06 0.00019 22.5 1.1 3 23 457 477 455 477 0.97

9 14 8.9e-05 0.011 17.0 0.1 2 23 506 527 505 527 0.97

10 14 3.9e-06 0.00047 21.3 0.5 1 20 554 573 554 575 0.96

11 14 3.4e-06 0.0004 21.5 0.4 2 23 584 605 584 605 0.98

12 14 7.2e-06 0.00085 20.5 0.5 1 23 611 633 611 633 0.98

13 14 2.9e-05 0.0034 18.6 0.7 1 23 656 678 656 678 0.98

14 14 1.7e-07 2.1e-05 25.6 5.2 1 23 684 707 684 707 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00032	0.038	15.3	4.7	3	23	136	156	134	156	0.97
2	14	0.0021	0.24	12.7	0.3	1	21	213	233	213	234	0.92
3	14	0.00027	0.031	15.5	0.8	1	23	246	268	246	268	0.99
4	14	0.0073	0.87	11.0	6.4	2	23	275	296	274	296	0.97
5	14	8.4e-05	0.01	17.1	0.2	1	23	302	324	302	324	0.98
6	14	1.7e-05	0.0021	19.3	1.4	2	23	331	352	330	352	0.97
7	14	0.00052	0.062	14.6	0.4	1	23	427	449	427	449	0.98
8	14	1.6e-06	0.00019	22.5	1.1	3	23	457	477	455	477	0.97
9	14	8.9e-05	0.011	17.0	0.1	2	23	506	527	505	527	0.97
10	14	3.9e-06	0.00047	21.3	0.5	1	20	554	573	554	575	0.96
11	14	3.4e-06	0.0004	21.5	0.4	2	23	584	605	584	605	0.98
12	14	7.2e-06	0.00085	20.5	0.5	1	23	611	633	611	633	0.98
13	14	2.9e-05	0.0034	18.6	0.7	1	23	656	678	656	678	0.98
14	14	1.7e-07	2.1e-05	25.6	5.2	1	23	684	707	684	707	0.96

Sequence Information

Coding Sequence: ATGGACCAAGAAAATCAGAGTGTTATTTATATCGAAAACTGGAATGATTTATGCCGATTGTGTCTCCGCAATGAACAAAAATTGCAAAATTTGTTTTTTGAAAGAACCCTTTTAGAAAATGTTCAAGAAGTTACTAATCTTCTATTTAATGCCGATGATTCTTTACCGAATTCTATATGCCAAATGTGTGTCGACCAAGTTAATTCATTTGTTGAATTTCGAGTACGTTGTAAGGCCACAGACGAATGGCTACGAAATGAAGGTACCATTTTGGATAATGATCATAAGGATAATATCGAAATTGTAGAAGTAGTGGACATCTGGAACGACGGTACTTCATTGGAAAAGAATGAAAGCATAATTTCCCAATTATGTATAGAAAATAATGATGATAAATTTTgtttgtgtgaagattgtggagaatgctttgaaacaactaaacaacttactttacatactaaaacaCATTCTTCTGACCATGTTAAATGCAACTTGTGTAATGTAGTTATAGATAACTATAGTAAATTTGATAATTCATTATTCAAAGATAAAATAAACCTATGCACAAAGTGTAAAAATTTGAATAATATTGACAATTTAGAAGTAAAAAATTCTTATACAGAAATTGAAGGTGGTTTTTTATGTGAAAAATGTCAAAAAGTTTTCAAAACACTGGCTGGCATGTTATCTCAtttgcgaaattatgaaaaaaaattagaaattggttctttgtcctatcagtgtcattTTTGTGAGGAAATATTTGCAACTATTCAGCAAGTTTGGATACATATGAAAACTCATGCACCCGGTGAGAAAATAAAATGTCGTCATTGTGAAAAATGTTTTAAATCATACTTAACACTTGTTCGTCATGAAAACAAACATGAAGGTACTTTTAATTATGTATGTTCATATTGTGGAAGAGCTTTTGTTACACCATATGGTCGTGATAGGCATGAAATGACGCATAATGCGGCCAAAGACGTTCAATGTGAAAAATGCACTATGACATTTTACACTAGAGCTGAATATAATAGACATATGAGATATCATGATAATAATTCAATTATAATTGGTTCCGAAGAAATAAATAATAAAGATTTGTTATTGGATCCAAATCAATATGAAGAACAGTTAATTGATGATCCAGAACATGACAATAATAAGCAATTAGTTGAAAATGAAATTGAGTTATCGCATTGTATTGTTCAAACAGAAGAGGTAATGCAAATGTCTGTTAAAGATGATGATACATTAGAAACCAACTCTAGTGAACATCAATGTGGAATTTGTGGTAAAGAATTGTTGTCTGCATATACACTTGCAAACCACATGCGTTCTCACACAGGAGAGCGTCCTTATGGGTGCAGTGTGTGTGAAAAATTTTTCAAGACTAAATCCAATCTGAACGAACACTACCGAGTGCACAATCCAGAACTGCGTTGGATGAAGACGTCGAGCAGGGACATCCCGTCCATAACACGAGTGACGGTCACGTCCGAAGACATACTGACGTGCGGTCAGTGTTCCAAGGTGTTCGTGTCGCTGGACGAGTTGTCCGCACACGAGCGCGTCCACGACGAGGAACGGGAACAGCCGGAACAGCAGCCGCAGACGGACGAGACGaccgttgcacagtcggcggcgtcgtcgacgttcacgtgtgaacagtgcaacaaaaagttcacgtcgaaatcgcaactgtccgcgcacataggcaacagctgttcggacggcgttgaccggcagtgtccgtactgcggcaagcagttccggtcggtggccacgctggagaaccacaagcgggttcacaccagggaaaaaccgttcacttgcgagctgtgcgccaaggcgttccggaccaagggcaatctgcttgagcacaagcgcgtgcacgacaacagcctatggctgattaagagcaacgccaagatggtgaccgacggcggcgccgaccagcggttccagtgcacgtactgcgcgaaaccgttccggacgtacacggccctgttgaaccacgagcgcgtgcacacccgcgaaaagccgttcgagtgttccgtgtgcggcaaatgtttccgcaccaagtccaacctgacggagcacatgAAGGGCTGCCACGACATAGACTCGACAGCTTGTGGCTCGGACGAAGTGCAGGTGTTCACGTTCAAGACCCATTCGACGGTGGCCGCCAAACCCGAGCAGGAGTCCGCGTGA
Protein Sequence: MDQENQSVIYIENWNDLCRLCLRNEQKLQNLFFERTLLENVQEVTNLLFNADDSLPNSICQMCVDQVNSFVEFRVRCKATDEWLRNEGTILDNDHKDNIEIVEVVDIWNDGTSLEKNESIISQLCIENNDDKFCLCEDCGECFETTKQLTLHTKTHSSDHVKCNLCNVVIDNYSKFDNSLFKDKINLCTKCKNLNNIDNLEVKNSYTEIEGGFLCEKCQKVFKTLAGMLSHLRNYEKKLEIGSLSYQCHFCEEIFATIQQVWIHMKTHAPGEKIKCRHCEKCFKSYLTLVRHENKHEGTFNYVCSYCGRAFVTPYGRDRHEMTHNAAKDVQCEKCTMTFYTRAEYNRHMRYHDNNSIIIGSEEINNKDLLLDPNQYEEQLIDDPEHDNNKQLVENEIELSHCIVQTEEVMQMSVKDDDTLETNSSEHQCGICGKELLSAYTLANHMRSHTGERPYGCSVCEKFFKTKSNLNEHYRVHNPELRWMKTSSRDIPSITRVTVTSEDILTCGQCSKVFVSLDELSAHERVHDEEREQPEQQPQTDETTVAQSAASSTFTCEQCNKKFTSKSQLSAHIGNSCSDGVDRQCPYCGKQFRSVATLENHKRVHTREKPFTCELCAKAFRTKGNLLEHKRVHDNSLWLIKSNAKMVTDGGADQRFQCTYCAKPFRTYTALLNHERVHTREKPFECSVCGKCFRTKSNLTEHMKGCHDIDSTACGSDEVQVFTFKTHSTVAAKPEQESA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00135593; iTF_00134733; iTF_01305844;
90% Identity: -
80% Identity: -