Agly018376.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Aphis glycines
Gene Symbol
Znf516
Assembly
GCA_009928515.1
Location
scaffold:3420195-3423910[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00034 0.029 14.9 3.7 3 23 136 156 134 156 0.97
2 15 8.2 7e+02 1.1 0.2 2 14 162 174 161 177 0.82
3 15 0.0017 0.15 12.7 0.3 1 21 213 233 213 234 0.92
4 15 7.8e-05 0.0067 16.9 0.8 1 23 246 268 246 268 0.99
5 15 0.0062 0.53 11.0 6.4 2 23 275 296 274 296 0.97
6 15 7.1e-05 0.0061 17.1 0.2 1 23 302 324 302 324 0.98
7 15 1.5e-05 0.0013 19.2 1.4 2 23 331 352 330 352 0.97
8 15 0.00067 0.057 14.0 0.3 1 23 428 450 428 450 0.98
9 15 1.4e-06 0.00011 22.5 1.1 3 23 458 478 456 478 0.97
10 15 0.00015 0.013 16.0 0.1 2 23 507 528 506 528 0.96
11 15 8.5e-06 0.00072 20.0 0.4 1 20 570 589 570 591 0.96
12 15 2.9e-06 0.00025 21.5 0.4 2 23 600 621 600 621 0.98
13 15 7.9e-06 0.00067 20.1 0.5 1 23 627 649 627 649 0.98
14 15 7.4e-06 0.00063 20.2 1.2 1 23 677 699 677 699 0.98
15 15 1.5e-07 1.2e-05 25.5 5.2 1 23 705 728 705 728 0.96

Sequence Information

Coding Sequence
ATGGACCAAGAAAATCAGGGTGTTATATATATTGAAAATTGGAATGATTTATGTCGGCTGTGTCTACGCAATGAACAATCATTGCAAAATTTATTCTTTGAAGAAACTCTATTGGAAAATATTCAAGAAGTTACAAACCTTCACTTTAATGTTGAGGATTCTTTACCTAATTCTATTTGCAAAATATGCATTGAACAAGTTAATTCATTTGTTGAATTTCGAGTACGATGTAAAGCTACAGACGAATGGTTACGAAACGAAGCTGTGATTTTGGATAACGATAACAAGGATAATATCGAAATTGTAGAAGTAGTGGACATCTGGAACGACGGTACTTCATTGGAAAAGAAAGAAACCATAATTTCTCAATTATGTATAGAAAATACTGATGATAAATTTTGTTTATGTGAAGATTGTGGGGAATGTTTTGAAACAACTAAACAACTTGCTTTACATACTAAAACACATTCTTCTGACCATGTTAAATGCAATTTATGTAATGAAGTTTTAGATAACTATAGTAAATTTGATAATTCATTATTAAAAGATGAAATTAACCTATGTAAAAAGTGTAAAAATATGAATAATATTGATAATTTAGAAGTTAAAAATTCTTATAAAGAAATTGAAGGAGGTTTTTTATGTGAAAAATGCCAAAAGGTTTTCAAAACACTGGCTGGTATGTTATCACATTTAAGAAATTATGAAAAAAAATTAGAAATAGGTTCCTTGTCTTATCAGTGTCATTTTTGTGAGGAAGTTTTTGCAACAATTCAGCAAGTTTGGATACATATGAAAACTCATGCACCTGGTGAGAAGATAAAATGTCGTCATTGTGAAAAATGTTTCAAATCATACTTGACACTTGTACGCCATGAAAACAAACATGAAGGTACCTTAAATTATGTATGTTCATATTGTGGAAGAGCTTTTGTTACACCATACGGTCGTGATAGACATGAAATGACCCATAATGCAGCCAAAGACGTGCAATGTGAAAAATGTACAATGACGTTTTACACTAGAGCTGAATATAATAGACATATGAGATACCATGACAATGATTCTATAATAATTGATTCAGAAGAAATAAATAGTAAAGATTTATTATTAGTGGAACCAGATCAATATGAAGAGCAGTTAATTGATGATCCAGAACCTGTTGATAATAAGCAAATAGTTGAAAATGAAATTGAGTTAACTCATTGCATTGTTCAATCAGAAGAGGTTATGCAAATGTCTGTTAATGAAGAAGAGATATTAGAAACTAATACTAGTGATCATCAATGTGCAATTTGTGGTAAAGAGTTGTTGTCTGCATATACACTTGCGAATCACATGCGTTCCCACACAGGAGAACGTCCTTATGGATGCAGTGTGTGTGAAAAATTCTTCAAGACTAAATCCAATTTAAATGAACATTACCGAGTTCACAATCCGGAACTGCGTTGGATGAAGACGTCGAGCAGGGACATCCCGTCCATAACCCGAGTGACGGTCACGTCCGAAGACATTCTGACTTGCGGTCAATGTTCCAAGGTGTTCGTGTCGCTGGACGAATTGTCCGCGCACGAACGCTTACACGACGATCAGGACCAGGAACAGGAACAGGCGGAGGAACAGGTAGCCGCGCAGACTGCAGAGGCGGAGACGATCGTTTCGGCGGCGTCTGCGATGACGACGACGACGACGACGACGACGACGATGTTCACTTGTGAACAGTGCAACAAAAACTTCACGTCCAAGTCGCAACTCGTCTCGCACATCGGCAACAACTGTTCGGACGGCGCGGACCGGCAGTGTCCGTACTGCGGCAAGCAGTTCCGGTCGGTGGCCACGCTGGAAAACCACAAGCGGGTGCACACCAGGGAAAAACCGTTTACGTGCGAGCTGTGCGCCAAGCCGTTCCGGACCAAGGGCAACCTGTTGGAGCACAAGCGGGTGCACAACAACAGTCTGTGGCTGGTCAAGAACGAGCTGAAGACGACGGCGGACCACCAGGAGACGGGCGCGGGGGGCGACCAGCGGTTCCAGTGCACGTACTGTTCGAAACCGTTCCGGACGTACACGGCGCTGCTGAATCACGAGCGCGTGCACACCCGCGAAAAGCCGTTCGAGTGTTCGGTGTGCGGCAAGTGTTTCCGCACCAAGTCCAACCTGACCGAACACATGAAGGGCTGTCACGACATGGACACGTCGGCATGCGGCTCGGACGAAGTTCAAGTGTTCACGTTCAAGACCCAACCGTCGTCGGTTGCCGCCGCCGAGTCCGAGTCCGCGTGA
Protein Sequence
MDQENQGVIYIENWNDLCRLCLRNEQSLQNLFFEETLLENIQEVTNLHFNVEDSLPNSICKICIEQVNSFVEFRVRCKATDEWLRNEAVILDNDNKDNIEIVEVVDIWNDGTSLEKKETIISQLCIENTDDKFCLCEDCGECFETTKQLALHTKTHSSDHVKCNLCNEVLDNYSKFDNSLLKDEINLCKKCKNMNNIDNLEVKNSYKEIEGGFLCEKCQKVFKTLAGMLSHLRNYEKKLEIGSLSYQCHFCEEVFATIQQVWIHMKTHAPGEKIKCRHCEKCFKSYLTLVRHENKHEGTLNYVCSYCGRAFVTPYGRDRHEMTHNAAKDVQCEKCTMTFYTRAEYNRHMRYHDNDSIIIDSEEINSKDLLLVEPDQYEEQLIDDPEPVDNKQIVENEIELTHCIVQSEEVMQMSVNEEEILETNTSDHQCAICGKELLSAYTLANHMRSHTGERPYGCSVCEKFFKTKSNLNEHYRVHNPELRWMKTSSRDIPSITRVTVTSEDILTCGQCSKVFVSLDELSAHERLHDDQDQEQEQAEEQVAAQTAEAETIVSAASAMTTTTTTTTTMFTCEQCNKNFTSKSQLVSHIGNNCSDGADRQCPYCGKQFRSVATLENHKRVHTREKPFTCELCAKPFRTKGNLLEHKRVHNNSLWLVKNELKTTADHQETGAGGDQRFQCTYCSKPFRTYTALLNHERVHTREKPFECSVCGKCFRTKSNLTEHMKGCHDMDTSACGSDEVQVFTFKTQPSSVAAAESESA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01038654;
90% Identity
iTF_00134733;
80% Identity
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