Nrib001227.1
Basic Information
- Insect
- Nasonovia ribisnigri
- Gene Symbol
- Hr39
- Assembly
- GCA_027563275.1
- Location
- JANEHQ010000467.1:185007-191355[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.17 1.8e+03 -1.2 6.0 69 187 153 284 80 328 0.54 2 3 5.3e-07 0.0058 17.0 0.0 1 56 402 458 402 475 0.82 3 3 2.8e-71 3.1e-67 228.7 0.0 205 408 533 731 506 731 0.96
Sequence Information
- Coding Sequence
- ATGGCAGACAGTGACACCAGGATGTGGGGCCATAGCGTGCAGGTATCGTCCGGCCCGGTCACCGTCACGTCCATCAATCTGATCGCTCCTCGTCTGCAGCCCAACTCGCAGATCACCACGATAAAAGAGGAACCTCACGACAAGGACGGCACAATGACAGAAATAAAAGATGACATCATCGACGAAGTAGGTTCTGAATGCGATCGGGAAGTTAGTAAGATTGACTTTTCCGGAGTAACTATGAGAAGTAAAAAAATGAGAGCGGTAGAAGAAAACACGCCCCGGCCAATGTCCTGGGAAGGAGAACTTTCCGATTCGGAAATGAAACAGGAAGAAGATAGGACGGTGGACGTGCAGACTGCAAATCAAAATTATTTACTGCCGCGAAATGAAAATGTAAATAACCAAAAATCGTCTCCGGTTAAACGAATTATTTATAACGATAATAATTTGGTTGACCGAGTGATGGAGCATGTCAAGAGCAAAGTAACTTCGTCGAACAACGACATTCCGTTACTTGTTGATAAATTGTTAGGTGGCGGTTACAGCCCGTTACTCCAACATAGAACTAATGGAGTCAAACATACATCACACATTCCACCAACTCAAAGCCCAGACTCGGCCATACACTCTTGTTGCTCACCCGCACAGTCACCAATCACTTCCAGACATAATCCTCCGTCATCTTCAGGGTTTTCGTCCCCATCCACATTCACACCGTCGTCATTGTCGAGGAATAATAGCGATGCTTCACAATATGGTGGATCACAACATAGTTCTTGTTATAGTCAAAGTTATTCCTCGCTATCTGTTTCGCCTACACATTTTTCCCCGACACAATCACCAATACAGCCAAGACACATACAAAGAAATTTTCATGAATATACTGTGACAGAGGAAACCAATGGCTATGAAGAGAAATTGTCAATGTCTGACATTGGCCAACAACATGGTATAACATCTGGTATTTCAAGACAACAACTAATAAATAGTCCCTGTCCAATTTGCGGTGATAAAATTTCTGGTTTTCATTACGGCATATTTTCATGTGAGAGTTGCAAAGGATTTTTCAAACGCACTGTACAAAATCATAAAAACTATGTGTGCCTACATGGTTCGGCATGTTTGATCACAATAGCTACACGCAAGAAGTGTCCAGCTTGCCGCTTTGACAAGTGCTTGAACATGGGTATGAAGCTAGAAGCAATCAGAGTTGATAGAACAAGAGGTGGACGTAGTACCTATCCGTTTACTTACACAATACCGCCTTCCAATATGCAGCCACAACATAGTGGACAACACTCTGGAATGAGCACTAATTCTGTAGAGAATAAAGTCAAGCATGAAGAACGTGCATGCAGGTCTCCACCACAAGAAGCAGCCAGACTGATCCCTCCATTATTGCAAAATTTGATGGTCTATAAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGAAGTGGAGCATTTATGGACTTATAATGAAGGCTCATTTGAATCGTCAAGTGCTAGTGGAAGTTCTATGAATCATTGTGGTGGTGCCAAAGAAATAGCTAAGAGTCGCTTAATGGCTGAAAATTCAGGAACAGATTTTCTTTCCAATTTATGCAACATTGCTGATCATCGGCTTTACAAAATAGTCAAATGGTGCAAATCATTACCGTTATTTAAAAACATTTCGATTGATGATCAGATATCGCTATTGATAAATGCCTGGTGTGAACTACTGTTATTCAGTTGTTGTTATCGATCAGTTAGCAGCCCCGGGGAAATACGTGTCAGCCTGGGCAAGTCCATTTCTTTAGATCAAGCAAGAGAATTAGGTTTGGCACCTTGTATTGAGCGCATGTTGAATTTTACTCAGCACCTGAGACGTTTGAGAGTAGATCGTTATGAATATGTAGCCATGAAAGTTATTGTGCTATTATCATCAGATACAAATGATTTAAAAGAACCAGAAAAAGTTCGTGCATCTCAGGAAAAAGCATTACATGCTCTGCAACAGTATACTCTGACACATTATCCAGAGATGCCATCCAAATTTGGAGAACTGTTGTTAAGGATACCTGATTTACAACGTACTTGTCAGGTTGGAAAAGAAATGTTGTCAATAAAGAGTAAGGAAGGAGAAGGACAAAGCTTCAATCTTTTAATGGAGTTATTAAGAGGCGATCATTAA
- Protein Sequence
- MADSDTRMWGHSVQVSSGPVTVTSINLIAPRLQPNSQITTIKEEPHDKDGTMTEIKDDIIDEVGSECDREVSKIDFSGVTMRSKKMRAVEENTPRPMSWEGELSDSEMKQEEDRTVDVQTANQNYLLPRNENVNNQKSSPVKRIIYNDNNLVDRVMEHVKSKVTSSNNDIPLLVDKLLGGGYSPLLQHRTNGVKHTSHIPPTQSPDSAIHSCCSPAQSPITSRHNPPSSSGFSSPSTFTPSSLSRNNSDASQYGGSQHSSCYSQSYSSLSVSPTHFSPTQSPIQPRHIQRNFHEYTVTEETNGYEEKLSMSDIGQQHGITSGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNHKNYVCLHGSACLITIATRKKCPACRFDKCLNMGMKLEAIRVDRTRGGRSTYPFTYTIPPSNMQPQHSGQHSGMSTNSVENKVKHEERACRSPPQEAARLIPPLLQNLMVYKFXXXXXXXXXXXXXXXEVEHLWTYNEGSFESSSASGSSMNHCGGAKEIAKSRLMAENSGTDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQISLLINAWCELLLFSCCYRSVSSPGEIRVSLGKSISLDQARELGLAPCIERMLNFTQHLRRLRVDRYEYVAMKVIVLLSSDTNDLKEPEKVRASQEKALHALQQYTLTHYPEMPSKFGELLLRIPDLQRTCQVGKEMLSIKSKEGEGQSFNLLMELLRGDH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00340610;
- 90% Identity
- iTF_00941576;
- 80% Identity
- iTF_01038459; iTF_01037821;