Nrib019914.1
Basic Information
- Insect
- Nasonovia ribisnigri
- Gene Symbol
- -
- Assembly
- GCA_027563275.1
- Location
- JANEHQ010002549.1:24218-26130[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.1e-07 0.00019 21.9 0.0 4 41 18 56 15 57 0.87 2 2 7.1 3.3e+03 -1.3 0.0 28 41 484 498 484 500 0.79
Sequence Information
- Coding Sequence
- ATGCCTCGTGATAGAAAAAGAACATCTAATAGGCAAATGTGGGATTCTAACAATATGCGTGCTGCTGTAAATGAAATTCTTGTTCTTGGAAAAACATATAGAGAAGCATGTGAGAAGTTTAGTGTTCCAAAAAGTACTCTCGAAAGAAAGGTAAAGAAAAAAAGAAATGATCCAACATGTGATGTTGGATTAAAAGATTCATTAGGACCAAGACAaacagtttttaacactacagaagaaaatgaattggtttcttatctgaaattaatggaaggtcgtttatttggtctaagtgttgaagatttaaaaaaacttgcttatcaacttgcagaaaaaaataatatcacccatgatttttctcatgttaaaaaaaaagcaggctttgattggtaccaaggattcatgaagaggcatcctgaactatctctaaggaaacctgaagcaacatctgttgcaagagcaatgggctttaataaaagggttgtagatgatttttttcaacttcttggtggattaatggatcaatataaatttaagcctgataggatatataattgtgatgagacggggatttcttctgtaccaaaatccaaatctaaaattattgcatcaaagggtaggaaacaagttggggctataacttctgctgaacgcggagaaaccgttactgtggaaatttgtatgaatgctgctggcacctacatgccacctttctttatatttccaagaaaaatgttcaacagtgaatttatgagaaatgccccaattggttcagtagctgaattccaccaatcagggtggatgcaaaaagacatttttgaaaaatggatggtgcattttattcaattttcttatgctactcaagataatccagttttattattgttagatggccactgtactcacactaagagtattgaactgattcaaatagcccgtgataatggagttgtactcctttgctttcctcctcattgtactcacagattacagcctctagatgtcgcatttatgaagcctctgagtacatactatgacaaagaaactacaaattggcttagaaaccatggcggtgatgttgtaacattaaaacaactggctgaaatttttggattagcttttataaaagctgcaaccatgacaacagcaatcaatggttttcaaaaaacaggaatttgtccgtttaatccagatatttttaatgatttggatttCATGGCTGCTGAGACAACTAATGTACTAATAGAAAAAGATGATATGGCTCAAGTTTCCAGTGTTCCGCCTTTACCAGTCATCAGAGAGTCATGTATGTTACCAGAAGCTTCAAATTCTACAACAGATAATGAAAAAGTACCAGATCCTATACCTGGGTGTTCACACTGGAATGATCAAACACCTACAGTAAAAAAAACTACATTTAAAAATGTTTCACCTGAAGATGTTTTACCTGTACCTCAGCAAACATTAGAAAATAGGGAAAAGAAAAAAAGGAACTCTCGCTTTAGCGGAAAAACTGCTGTTATAACAGAATCTCCATATAAAAAGGCATTGGAAGAGCACCAAAAAAATAGTAAAAAGTTTCCAGCTAAACGCAAGGTTACAAATGTAAAAAAAAAGTTATTTTCCAAACCTGACAAACCTTCCAACAAAGTGTATGAACAAAATGATGATCAAACAAGTAATGAAGATGATGTTGAATGTCTTTACTGTGGCAATACCTATTTGCAATCAAATGAAGGCTGGGTTCAATGCAGGGTATGCTTAAAATGGGCACATTGTTCTTGTGCTGGCGAAGATGACAATGATGATGAACTGTATCACATTTGTGACATTTGTAAAGTTTAA
- Protein Sequence
- MPRDRKRTSNRQMWDSNNMRAAVNEILVLGKTYREACEKFSVPKSTLERKVKKKRNDPTCDVGLKDSLGPRQTVFNTTEENELVSYLKLMEGRLFGLSVEDLKKLAYQLAEKNNITHDFSHVKKKAGFDWYQGFMKRHPELSLRKPEATSVARAMGFNKRVVDDFFQLLGGLMDQYKFKPDRIYNCDETGISSVPKSKSKIIASKGRKQVGAITSAERGETVTVEICMNAAGTYMPPFFIFPRKMFNSEFMRNAPIGSVAEFHQSGWMQKDIFEKWMVHFIQFSYATQDNPVLLLLDGHCTHTKSIELIQIARDNGVVLLCFPPHCTHRLQPLDVAFMKPLSTYYDKETTNWLRNHGGDVVTLKQLAEIFGLAFIKAATMTTAINGFQKTGICPFNPDIFNDLDFMAAETTNVLIEKDDMAQVSSVPPLPVIRESCMLPEASNSTTDNEKVPDPIPGCSHWNDQTPTVKKTTFKNVSPEDVLPVPQQTLENREKKKRNSRFSGKTAVITESPYKKALEEHQKNSKKFPAKRKVTNVKKKLFSKPDKPSNKVYEQNDDQTSNEDDVECLYCGNTYLQSNEGWVQCRVCLKWAHCSCAGEDDNDDELYHICDICKV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00134187;
- 90% Identity
- iTF_00134187;
- 80% Identity
- -