Acrc011636.1
Basic Information
- Insect
- Aphis craccivora
- Gene Symbol
- -
- Assembly
- GCA_009835225.1
- Location
- VUJU01013199.1:21-1676[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 2.1e-07 0.00012 22.4 0.0 5 41 1 38 1 39 0.85 2 3 9.7 5.5e+03 -2.1 0.0 17 28 332 343 328 345 0.80 3 3 3.6 2e+03 -0.7 0.0 28 42 455 470 455 473 0.81
Sequence Information
- Coding Sequence
- ATGCGTGCTGCTGTAGATGAAATTCTTGTTCTTGGAAAAACATTTAGAGAAGCATGTGAGAAGTTTAGTGTTCCAAAAAGTACTCTCGAAAGAAAggtaaagaaaaaaagaaatgatcCAACATGTGATGTTGGAGTAAAAGATTCATTAGGACCAGGACCAAGACTAACAGTTTTTAGCACTACAAAAGAAAATGAATTGGTTTCTTATCTGAAACTAATGGAAGGTCGTTTATTTGGTCTAAaaaaaaataatatcacccATGATTTTTctcatgttaaaaaaaaagcaggtTTTGATTGGTACCAAGGATTCATAAAGAGGCATCCCGAACTATCTTTAAGGAAACCTGAAGCGACATCTGTTGCAAGAGCAATGGGCTTTAATAAAAGGGTTgtagatgatttttttcaacttcttGGTGGATTAATggatcaatataaatttaagccTGATAGGATATATAATTGTGATGAGACGGGGATTTCCTCTGTACCAAAAtccaaatctaaaattattgcatCAAAGGGTAGGAAACAAGTTGGGGCTATTACTTCTGCTGAACGCGGAGAAACCGTTACTGttgaaatttgtatgaatgCTGCTGGCACGTACATGCCACCtttctttatttttccaaGAAAAATGTTCAACAGTGAATTTATGAGAAATGCCCCAATTGGTTCAATAGCTGAATTCCACCAATCAGGGTGGATgcaaaaagatatttttgaaaaatggacggtgcattttattcaattttctcaTGCTACTCAAGATAAtccagttttattattgttagatgGCCATTGTACTCACACTAAGAGTATTGAACTGATTCAAATAGCCCGTGATAATGGAGTTGTACTCCTTTGCTTTCCTCGTCATTGTACTCACAGGTTACAACCTCTAGATGTCGCATTTATGAAGCCTCTGAGTACATACTATGACAAAGAAACTACAAATTGGCTTAGAAACCATGGGGGTGATGTTGTAACATTAAAACAACTGGCTGAAATTTTTGGATTAGCTTTTATAAAAGCTGCAACCATGACAACAGCAATCAATGGTTTTCAAAAAACAGGAATTTGTCCGTTTAATccagatatttttaatgatttggaTTTCATGGCTGCTGAGACAACTAATGTACTAATAGAAAATGATGATATGGCTCAAGTTTCCAGTGTTCCGCCTTTACCAGTCATCAGAGAGTCATGTACGTTACCAGAAGCTTCAAATTCTACAACAGATAATGAAAAAGTACTAGATCCTATGTCTGGGTGTTCACACTGGAATGATCAAACacctacagtaaaaaaaactacatttaaaaatgtttcaccTAAAGATGTATTACCTGTACCTCAGCAAACATTAGAAAATagggaaaagaaaaaaagaaactcTCGCTTTAGAGGAAAAACTGCTGTTATAACAGAATctccatataaaaaatcattggaAGAGCaccaaaaaaatagtaaaaagttTCCAGCTAAACGCAAGgttacaaaagtaaaaaaaaaaattattttccaaaccTGA
- Protein Sequence
- MRAAVDEILVLGKTFREACEKFSVPKSTLERKVKKKRNDPTCDVGVKDSLGPGPRLTVFSTTKENELVSYLKLMEGRLFGLKKNNITHDFSHVKKKAGFDWYQGFIKRHPELSLRKPEATSVARAMGFNKRVVDDFFQLLGGLMDQYKFKPDRIYNCDETGISSVPKSKSKIIASKGRKQVGAITSAERGETVTVEICMNAAGTYMPPFFIFPRKMFNSEFMRNAPIGSIAEFHQSGWMQKDIFEKWTVHFIQFSHATQDNPVLLLLDGHCTHTKSIELIQIARDNGVVLLCFPRHCTHRLQPLDVAFMKPLSTYYDKETTNWLRNHGGDVVTLKQLAEIFGLAFIKAATMTTAINGFQKTGICPFNPDIFNDLDFMAAETTNVLIENDDMAQVSSVPPLPVIRESCTLPEASNSTTDNEKVLDPMSGCSHWNDQTPTVKKTTFKNVSPKDVLPVPQQTLENREKKKRNSRFRGKTAVITESPYKKSLEEHQKNSKKFPAKRKVTKVKKKIIFQT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01037698;
- 90% Identity
- iTF_01037698;
- 80% Identity
- -