Nvit007832.1
Basic Information
- Insect
- Nasonia vitripennis
- Gene Symbol
- LITAF
- Assembly
- GCA_009193385.2
- Location
- NC:19523254-19526638[-]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-26 4.2e-23 80.8 11.2 2 70 82 151 81 151 0.96
Sequence Information
- Coding Sequence
- ATGTTTCAAAGTCTGAGATtttgCAGCTTCCTGTTGGCCAAACAAACCaactatatattattcaagGCAACTATAAATACCATGAACAAAAATGGACCACCACCTCCGTATGATCCCCCTCCGACAGCACCTCCTAGCTATGCACAGTGTGTGGGCGGTGTACCACCGGCAAGTCCATTTACACCGGCTGAAACATaTGTCAATGGGCCTACAATAGTGACAACTATAGTGCCACTTGGACCTGGTTCAACGCATACGATATGCCCGCATTGTTATGCTGAAATTGACACTGCAACCAGAACTGAGCCTGGAATGGTGGCTTATATTTCGGGATTTATAATTGCACTTCTAGGaTGCTGGGCTGGTTGTTGTTTAATACCATGTTGCATTGATGATTGCATGGATGTTCACCACACATGCCCAAATTGCAAGGCCTATCTGGGTCGTCATAGAAGATAA
- Protein Sequence
- MFQSLRFCSFLLAKQTNYILFKATINTMNKNGPPPPYDPPPTAPPSYAQCVGGVPPASPFTPAETYVNGPTIVTTIVPLGPGSTHTICPHCYAEIDTATRTEPGMVAYISGFIIALLGCWAGCCLIPCCIDDCMDVHHTCPNCKAYLGRHRR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01483521;
- 90% Identity
- iTF_00144257; iTF_01219457; iTF_00309890; iTF_00970082; iTF_01381762; iTF_00713379; iTF_00646469; iTF_01036709; iTF_00080870; iTF_01112267; iTF_00074157; iTF_00691630; iTF_00969265; iTF_00708274; iTF_01035890; iTF_00692596; iTF_01110612; iTF_00693461; iTF_01111446; iTF_01113878; iTF_01381015; iTF_00287737; iTF_00714841; iTF_01428729; iTF_01113114; iTF_01470171; iTF_01524379; iTF_00690780; iTF_01487389; iTF_00286878; iTF_01469342; iTF_01465870; iTF_01190897; iTF_01467637; iTF_01466792;
- 80% Identity
- iTF_01487389;