Nvit012450.1
Basic Information
- Insect
- Nasonia vitripennis
- Gene Symbol
- -
- Assembly
- GCA_009193385.2
- Location
- NC:30043275-30048025[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1.5 1.3e+02 2.9 6.5 2 23 439 462 438 462 0.96 2 10 0.0027 0.22 11.5 0.8 1 23 468 493 468 493 0.93 3 10 0.00095 0.08 13.0 0.2 1 23 499 523 499 523 0.91 4 10 0.035 2.9 8.0 2.4 3 23 530 552 528 552 0.96 5 10 0.00074 0.063 13.3 2.6 1 21 559 581 559 583 0.92 6 10 1.1e-06 9.5e-05 22.2 0.1 2 23 591 614 590 614 0.94 7 10 1.8e-05 0.0015 18.4 1.1 1 23 620 644 620 644 0.97 8 10 0.00077 0.065 13.2 1.6 1 23 650 674 650 674 0.97 9 10 0.00018 0.016 15.2 0.1 1 23 680 702 680 702 0.98 10 10 0.95 80 3.5 1.9 1 23 771 796 771 796 0.93
Sequence Information
- Coding Sequence
- ATGTCGCAGAGTTTGGCGACGCTGAGCCATCATCATCAGGGATTATACAGTAGGCCGCGAAATTCCAGTCAGCCGTACCTATTTCAGCACGAGTACGAAAGGTTTCTACTATCAACGGAAAACGTGCTCGCCGCTACTGTCAAAGGGAACCATCATGAGCAGCTCGACGACTTTCCCGACCACGAGGCCCTCGAGCATCGGGATACTTCTTCCGATTCCCAAAGCGATGAGGTACTGGAGCAGCAAATTAATGCTCATAGGCCCCGAACAGTGGAGGACATTGAAAAATGGCTGAAGAATATCAAGCCCGTATCAAGTACAAATTACGACAAGAATGTCAATTCAAAGGCCAGCATGGAGAGGTACTTAAACGAACACTTGCCAGGGTTATTTTTTGACAAAGATTTTGGGATTGCGGagaataatttaatgaataataatttaactATAAACTTTGATGCTATCTTCAACGATATACAAGATGACGAACTTATCTCCACACAAGATAAGGACGATGTGTTCATGCTTCCAGACTTGCAATTAGATAACTTAGATCAATTAGCATACTGCACGGATGATATGATTCTAACGAGTGATATCCTAGCTAGCCCATGCGACCAACCACCGTGtacaaatataaatgttaataCTAAAGACTTCTTTATAAGACTACAAGAAACTATTAATGTAATAAgcggtaataataatatttttactcaGGAACTAGGTGACAATAATTTACATAACAATGTTATGACGTTTGCAAATTATTTGGAGGAAGATTCGAGTAATAATTCTCTAACAGCGAGTACAGTAAACTCGTACCAAGTTAAAGCGTCTTGCAACAAATCCAACATAGATGATACCAGTGACTGCTCGAATTTAGAAAGTAATGAAGATTCATACACCATAAAATCTAATAGCTCAACACTGCAAGCGGCTGATCCAACAAGAccaacaaaattatatataaaattaaagaagGTGAATAGCAGTGTAGCAGACAAAAATTCAACTCAGCAAAAGAATCAAATAGTAGATAAAGTATTTACTCGCTCTAGAAAGAAAGACTTATCAGTTGACGATAGCTTAGTGGGCAAAGAATCTGAGAACAGCAAAAGTCTTAAAGATAGATTAAGAAAAAAGTCAAGCACTTATAATTCTCAGGAAAGCAAGCGAGATGATAATTTGAGAATCAGACTATACTCAAGTTACAGTCAACAAGATCAAGTCATTTTGAAAGCACTGAAAGAAGTAGGCATCACAGATGCTAAGTTGCAGCATTTCCGATCAGAAGATAACTCAACAATCTGGAAGTGCCATCAAGATAATTGTCATCGTATTTTCGATAAAATATGTAGACTCAGAAGTCATCTGCTAACTCACTTTGGCATCAAACCATTCAAGTGCGACTACAATGGCTGCTCTTGGGCGTTCTATTCCAACGACAAACTCCTTCGTCACAAGGAGTTACGCCACTTGAAGAACAAGAATTACGCGTGTTCTCAGCCCGGCTGCGGACGCAAATTTGCGACACATCAAAATCTAGCGGTGCACGAAGATTTACATGCGGGTCTAGGCATAGCCTGCCACGTGCAGGAGTGCTCTGCCAAGTTCCAGTCGAAGAAATGTCTGGACGCACACATTAAGACGCACCGCGAGTATTTACCTCCTTACATATGCAGTTACGAAAGCTGCGGCAAGCGCTTTTACAACAACAGCGCCTTGATGTCGCATCAGCGCTGCCACAGCTACACGGACATGGACGTCACTTGCTCCTGGCCAGGCTGCGGTAAAACTTTCGATCAACCGTCTCGACTAAAGGTCCACATGCGTTCGCACACCGGCCAGAAGCCTTACGCCTGTACCTACAGGGGCTGCAAGTGGGCCTTCTCAACGGCCAGCAAATTGAGTCGTCACCAAAAGAAACATAGCAACAATCGTAAATTCGTTTGCGACATTGGAGACTGCAGAAAGTCATATCAGCGGCTGGATCATTTGAGGGATCACAAGCTCAAGCACACAGAAGAGAGATTATTTATTTGCGGCTACTGCGACGCTGCATTCTCTCTCAAGAATGGACTTTACGCTCATATTAAGAAGCACTCGAAAACGGATTTTGTTAGTAAAGGCCATAACaaagcaaagaaaaataagacTGTTGAGAAAAAGAACACGAGGAAGAAGGAAGCTTACTGTTCTAGAGTACTACCCGTTAGAATTTCGGATAACAGATCGAAGAAAACAGCGTTAACCGATTGTGATGCGGGCAATGACCAAAGCACAACTAATCGAAACGCCGAGGATATGTATTTTTGCCCAGTTGAAACTTGCGCAAAGTGGTGCCCAACGAAATCTAGTTTAAGAATGCATTTTCAGAGGAAGCACAAGCGGCCTCTTTCCGAAATTCAAAATCGTGGCGAGACCCACCCGACCTTACCCACCTCTATGGAGACACAAGAAGTTGGACAGTCTCTCGACGGTAACGAAGATTCGGCAAGAACTGTATTTACCCACCAATATAATTCAAGCTCGAAACCCGACAGAGGAGTTGTGGAATCGAGTGCAGCAGTAGACGACGTCGTTTTAGACGTGGGCACCTTCGGTGACTGCCTTCTGCTACCGGATGAGCCGCCCTCCATGTGTTGCCAGGAGGACATTAATGTTTTAGAATACCAAACGGTACTGCTCGACGCAATTCCGACTGATAACGACATCAGCATGTGTGGCTTGGAGTAG
- Protein Sequence
- MSQSLATLSHHHQGLYSRPRNSSQPYLFQHEYERFLLSTENVLAATVKGNHHEQLDDFPDHEALEHRDTSSDSQSDEVLEQQINAHRPRTVEDIEKWLKNIKPVSSTNYDKNVNSKASMERYLNEHLPGLFFDKDFGIAENNLMNNNLTINFDAIFNDIQDDELISTQDKDDVFMLPDLQLDNLDQLAYCTDDMILTSDILASPCDQPPCTNINVNTKDFFIRLQETINVISGNNNIFTQELGDNNLHNNVMTFANYLEEDSSNNSLTASTVNSYQVKASCNKSNIDDTSDCSNLESNEDSYTIKSNSSTLQAADPTRPTKLYIKLKKVNSSVADKNSTQQKNQIVDKVFTRSRKKDLSVDDSLVGKESENSKSLKDRLRKKSSTYNSQESKRDDNLRIRLYSSYSQQDQVILKALKEVGITDAKLQHFRSEDNSTIWKCHQDNCHRIFDKICRLRSHLLTHFGIKPFKCDYNGCSWAFYSNDKLLRHKELRHLKNKNYACSQPGCGRKFATHQNLAVHEDLHAGLGIACHVQECSAKFQSKKCLDAHIKTHREYLPPYICSYESCGKRFYNNSALMSHQRCHSYTDMDVTCSWPGCGKTFDQPSRLKVHMRSHTGQKPYACTYRGCKWAFSTASKLSRHQKKHSNNRKFVCDIGDCRKSYQRLDHLRDHKLKHTEERLFICGYCDAAFSLKNGLYAHIKKHSKTDFVSKGHNKAKKNKTVEKKNTRKKEAYCSRVLPVRISDNRSKKTALTDCDAGNDQSTTNRNAEDMYFCPVETCAKWCPTKSSLRMHFQRKHKRPLSEIQNRGETHPTLPTSMETQEVGQSLDGNEDSARTVFTHQYNSSSKPDRGVVESSAAVDDVVLDVGTFGDCLLLPDEPPSMCCQEDINVLEYQTVLLDAIPTDNDISMCGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01035717; iTF_01036581;
- 90% Identity
- iTF_01035717;
- 80% Identity
- -