Ngir007890.1
Basic Information
- Insect
- Nasonia giraulti
- Gene Symbol
- -
- Assembly
- GCA_000004775.1
- Location
- GL277538.1:3019882-3023138[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 2.2 1.5e+02 2.9 6.5 2 23 446 469 445 469 0.96 2 10 0.0025 0.17 12.2 0.7 1 23 475 500 475 500 0.93 3 10 0.00051 0.034 14.3 0.4 1 23 506 530 506 530 0.94 4 10 0.052 3.4 8.0 2.4 3 23 537 559 535 559 0.96 5 10 0.0011 0.073 13.3 2.6 1 21 566 588 566 590 0.92 6 10 1.7e-06 0.00011 22.1 0.1 2 23 598 621 597 621 0.94 7 10 2.6e-05 0.0017 18.4 1.1 1 23 627 651 627 651 0.97 8 10 0.0011 0.076 13.2 1.6 1 23 657 681 657 681 0.97 9 10 0.00027 0.018 15.2 0.1 1 23 687 709 687 709 0.98 10 10 1.4 94 3.5 1.9 1 23 778 803 778 803 0.93
Sequence Information
- Coding Sequence
- ATGTCGCAGAGTTTGGCGACGCTGAGCCATCATCATCAGGGATTATACAGTAGGCCGCGAAATTCCAGTCAGCCGTATCTATTTCAGCACGAGTACGAAAGGTTTCTACTATCAACGGAAAACGTGCTCGCCGCTACTGTCAAAGGGAACCATCATGAGCAGCTCGACGACTTTCCCGACCACGAGGCCCTCGAGCATCGGGATACTTCTTCGGATTCCCAAAGCGATGAGGTACTTGAGCAGCAAATTAATGCTCATAGGCCCCGAACAGTGGAGGACATTGAAAAATGGCTGAAGAATATCAAGCCTGTATCAAGTACAAATTTCAACAAGAATGTCAATTCAAAGGCCAGCATGGAGAGGTACTTAAACGAACACTTGCCAGGGTTATTTTTTGACAAAGATTTTGGGACTGCGgagaataatttaatgaataagAATTTAACTATAAACTTTGATGCTATCTTTAACGATATACAAGATGACGAACTTATCTCCACACAAGATAAAGACGATGTGTTCATGCTTCCAGACTTGCAATTAGATAACTTAGATCAATTAGCATACTGCACGGATGATATGATTCTAACGAGTGATATCCTAGCTAGCCCGTGCGACCAACCACCGTgtacaaatataaatgttaatacTAAAGACTTCTTTATAAGACTACAAGAAACTATTAATGTAATAAGCGGtaatagtaatatttttactcaGGAACTAGGtaacaataatttacataACAATGTTATgacgtttgaaaattatttggaGGAAGATTCGAGTAATAATTCTCTAACAGCGAGTACAGTAAACTTGTACGAAGTTAAAGCGTCTTGCAACAAATCCAACATAGATGATACCAGTGACTGCTCGAATTTAGAAAGTAATGAAGATTCATACACCATAGAATCTAATAGCTCAACACTACAAGCAGCTGATCCAACAAGACCAACAaaattacatataaaattaaagaaggTGAATAGCAGTGTAGCAGACAAAAATTCAACTCGGCAAAAGAATCAAATACTAGATAAAGTATTTACTCGCTCTAGAAAGAAAGACTTATCAGTTGACGATAGCTTAGTGGGCAAAGAATCTGAGAATTCTATCGTTGCAAATGAGAACAGCAAAAGTCTTAAAGATagattaagaaaaaagtcaagcaCTTATAATTCTCAGGAAAGCAAGCGAGATGATAACTTGAGAATCAGACTATACTCAAGTTACAGTCAACAAGATCAAGTCATTTTGAAAGCACTGAAAGAAGTAGGCATCACAGATGCTAAGTTGCAGCATTTCAGATCAGAAGATAACTCGACAATCTGGAAGTGCCATCAAGATAATTGTCATCgtattttcgataaaatatgTAGACTCAGAAGTCATCTGCTAACTCACTTTGGCATCAAACCATTCAAGtgCGACTACGATGGCTGCTCTTGGGCGTTCTATACCAACGACAAACTCCTTCGTCACAAGGAGTTACGCCACTTGAAGAACAAGGATTACACGTGTTCTCAGCCCGGCTGCGGACGCAAATTTGCGACACATCAAAATCTAGCGGTGCACGAAGATTTACATGCGGGTCTAGGAATAGCCTGCCACGTGCAGGAGTGCTCTGCCAAGTTCCAGTCGAAGAAATGTCTGGACGCGCACATTAAGACGCACCGCGAGTATTTACCTCCTTACATATGCAGTTATGAAAGCTGCGGCAAGCGCTTTTACAACAACAGCGCCTTGATGTCGCATCAGCGCTGCCACAGCTACACGGACATGGACGTCACTTGCTCCTGGCCAGGCTGCGGTAAAACTTTCGATCAACCGTCTCGACTAAAGGTCCACATGCGTTCGCACACCGGCCAGAAGCCTTACGCCTGTACCTACAGGGGCTGCAAGTGGGCCTTCTCAACGGCCAGCAAATTGAGTCGTCACCAAAAGAAACACAGTAACAATCGTAAATTCGTTTGCGACATTGGAGACTGCAGAAAGTCATATCAGCGGCTGGATCATTTGAGGGATCACAAGCTCAAGCACACAGAAgagagattatttatttgcggCTACTGCGACGCTGCATTCTCTCTCAAGAATGGACTTTACGCTCATATTAAGAAGCACTCGAAAAAGGATTTTGTTAGTAAAGGCCATaacaaagcaaagaaaaataagactGTTGAGAAAAAGAACGCGAGGAAGAAGGAAGCTTACTGTTCTAGAGTACTACCCGTTAGAATTTCGGCTAACAGATCGAAGAAAACAACGTTAACCGATTGTGATACGGGCAATGACCAAAGCACAACTAATCGAAACGCCGAGGATATGTATTTTTGCCCAGTTGAAACTTGCGCAAAGTGGTGCCCAACGAAATCTAGTTTAAGAATGCATTTTCAGAGGAAACACAAGCGGCCTCTttccgaaattcaaaatcgtGGCGAGACCCACACGACCTTACCCACCTCTATGGAGACTCAAGAAGTTGGACAGTCTCTCGACGGTAACGAAGATTCGGCAAGAACTGTATTTACCCACCAATATATTTCAAGCTCGAAACCCGACAAAGGAGTTGTGGAATCGAGTGCAGCAGTAGACGACGTCGTTTTAGACGTGGGCACCTTCGGTGACTGCCTTCTGCTACCGGATGAGCCGCCCTCCATGTGTTGCCAGGGGGACATTAATGTTTTAGAATACCAAACGGTACTGCTCGACGCAATTCCGACTGATAACGACGTCAGCATGTGTGGCTTGGAGTAG
- Protein Sequence
- MSQSLATLSHHHQGLYSRPRNSSQPYLFQHEYERFLLSTENVLAATVKGNHHEQLDDFPDHEALEHRDTSSDSQSDEVLEQQINAHRPRTVEDIEKWLKNIKPVSSTNFNKNVNSKASMERYLNEHLPGLFFDKDFGTAENNLMNKNLTINFDAIFNDIQDDELISTQDKDDVFMLPDLQLDNLDQLAYCTDDMILTSDILASPCDQPPCTNINVNTKDFFIRLQETINVISGNSNIFTQELGNNNLHNNVMTFENYLEEDSSNNSLTASTVNLYEVKASCNKSNIDDTSDCSNLESNEDSYTIESNSSTLQAADPTRPTKLHIKLKKVNSSVADKNSTRQKNQILDKVFTRSRKKDLSVDDSLVGKESENSIVANENSKSLKDRLRKKSSTYNSQESKRDDNLRIRLYSSYSQQDQVILKALKEVGITDAKLQHFRSEDNSTIWKCHQDNCHRIFDKICRLRSHLLTHFGIKPFKCDYDGCSWAFYTNDKLLRHKELRHLKNKDYTCSQPGCGRKFATHQNLAVHEDLHAGLGIACHVQECSAKFQSKKCLDAHIKTHREYLPPYICSYESCGKRFYNNSALMSHQRCHSYTDMDVTCSWPGCGKTFDQPSRLKVHMRSHTGQKPYACTYRGCKWAFSTASKLSRHQKKHSNNRKFVCDIGDCRKSYQRLDHLRDHKLKHTEERLFICGYCDAAFSLKNGLYAHIKKHSKKDFVSKGHNKAKKNKTVEKKNARKKEAYCSRVLPVRISANRSKKTTLTDCDTGNDQSTTNRNAEDMYFCPVETCAKWCPTKSSLRMHFQRKHKRPLSEIQNRGETHTTLPTSMETQEVGQSLDGNEDSARTVFTHQYISSSKPDKGVVESSAAVDDVVLDVGTFGDCLLLPDEPPSMCCQGDINVLEYQTVLLDAIPTDNDVSMCGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01037310;
- 90% Identity
- iTF_01037310;
- 80% Identity
- -