Nlon015641.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nasonia longicornis
Gene Symbol
PRDM10
Assembly
GCA_000004795.1
Location
GL277968.1:2404891-2408919[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 0.0053 0.34 11.3 4.9 1 23 611 633 611 633 0.91
2 8 0.00024 0.015 15.5 1.6 2 23 642 663 641 663 0.97
3 8 5.7 3.7e+02 1.7 0.0 2 12 671 681 670 687 0.82
4 8 8.9e-05 0.0058 16.9 3.7 1 23 699 721 699 722 0.95
5 8 0.021 1.4 9.4 3.3 1 23 727 749 727 749 0.97
6 8 8.2e-06 0.00053 20.1 1.5 1 23 755 778 755 778 0.96
7 8 0.0017 0.11 12.8 1.0 1 23 811 834 811 834 0.97
8 8 3.7e-05 0.0024 18.1 2.4 1 23 856 879 856 879 0.97

Sequence Information

Coding Sequence
ATGGACCAAGGGGGCCCTCCTGAGGGGGCCCCTGTTGTCATCGCTGACCCCATGGACATGACTATCATCGACAAGGTCTGCAACGAGAGCAACTGGCCCGACGACAACATCGTCTCCTCGTCGACTTTCTGCGATAATCCGAGGAAGCTCAACAACAAACTGCTATTTTTGACTGTGAGTGTGGAGTATGTCGAAGATCAAGCCAGAGATTTTGGTCGTATGTATCCATATGAGCAAGTTTCCTTTTCGTCAAGGGCCAACTCTCCCTTGTCGGACTTTGAACATCGTGTTAGTCCTCATGATCCAAATATGAGTTCAGCTGCGAGATACTCTCCTACTCCTGTTCCGTTGCCATCCTCACCATTCCACAATTCAGTAGTTGTTCTTCAGGAACCTTCTTCACCCCTCATATCAACATCGGAATCAGCAGTACGAATCACAAATGGATATTCATCTCAGCTTACCGATCAATCATCAAATCCCAGCCTGTCTCAAAGTGACAATTCTGAAGATTTTACTGACAGTACAAGTGATGGACTAGTCTCGAGTGTTGGGAATGAATTAATGCTCATACAAGGTTCAAATTCAGAGCTGGAAGCTTCATCTACTCCACTTATGCTGTCAGGCATTTCAGCATCTGATCTCACACTTACGAGAGACTTTCTGGTCATGCAAGAAGATCATATCAATGTCATGAATCCTATGAAACTTAATTCGAGTTTGGAGCAAAATGTCAATCAAATTGCAGAAACCATCTTACCACATGATATTGATGATGAAACCAACGCACAAATAtcaacaatgaaaatttttaaaaagtttattgaacAGCCAAATCAAATCTTGGATTCAAACAAGAAAGAAGTTCAGTGGCCAAAAGATCAATCCATTGAAGATAATAGCCTATGGTATAATGAAGACTGTGATAGCACTTGCACAGATGTGGCAGATTGTACTTTACACAGTGTATGCACTATTGCCGATCAACCAGTTCCTTCTAGAGCTGTTGCAACGCTACCAGGCCTCTACTTATCTATTGAGAAACTACCATCTTCTGACATCATTAATGCGCAATCAATAGAGTTTGGTATCtttgcaaaaagaaatattcgTCGTCGTACTCAGTTTGGTCCAATAGAAGGCATTTTACGCCCTTATAATGGATCGAAAATTGAGGGTTTACCGTTGTTGTTAGAATCCAAAGAGGAAGGCGACTTTTTCCAGATCGACGTTTCCGACGAAAaTTCATCAAACTGGATGCGTTTCGTCAGACCTGCTAAAACGTACGAAGAACAAAACCTAGTTATAAGTCAACAAAATGATGGCATAGTGTTTCTCACAACTCGGAATATAATGCCCAATGAAGAATTGAAAGCTGGTCCAAGTCTCGAATATGGTAAACGTAGAAATTTACCAGTACttgaagtaaaatttaaaaataatttagATTCGACTGTAGATTTTTGCACTCAGTCTCACATTACGACTGGACCACTTGAAATCGCCGATGAAAAAGTtactgaaaattcaaacgtcGATAATTTACGAAATAATTGTACAAAACTACAAAAGAAGCGCAAACCTACTCGTAGCTCATTCCAaaaatacGTAGAAGTTAACGAAATCAAAGAAAACGATTCAAGTGATATAAGCATTCTTCGAAGTGTTAGTAAAGACTTTAAATATACAGGATCTCCAAAACTAATTGatgaagataaagaaaaagaaaactctcCAGATTCTAAGTTACAATTAATGGAGCAAGAAGTAACGCAATCTAATCAAACGGATATTTCAGAGAAAAATGCGAACGTTGTCTCATCGAGTATTTATAAATGTGAAATATGCTCAAAACGATTTTCAACCAAATTGAAGTTTCAACAGCACTGCCTAGTACATGGTGTCAAAGATAATGAATCACTTACatgtaatgtttgtttaaaaacgTTTTTAAACAACTCTTCTCTGTCTCGTCATTTGAAAACTCACCAGAAAGAAAGACAGACTCTCGAGTGTCCTGTGTGCAGAGAAGCATTCGGACGTGTCTTGACTTTGAAAGATTTTGCAGAAACGCACCTCAATCAATATGAAACATTCACTTGCCCTCACTGCCCAAAATCGTTTACGAGCTATGCACTTACTCGTAAACACGCTAGAGCACATCATTTCGATCGGAAACATGAGTGCCAGTTTTGCTTAAAATGTTTTCCAGCAGCGGATAAATTGAGAATGCATTTATTAAAACACTCCGATCGCAGAGAATTTCAATGTGCTAATTGTGGCAAACAATTTAAACGAAAAGACAAACTTAAAGATCACGTTACTCGTGTACATTATACGCCAAAGACTAACAAGGACCAACTGTCGTCAAATAATCGTGCCAAAAAAGCAATCCCAAAGACAAATCCAGGAGATTGTGACcgttttatttacaaatgtCGTCGTTGCCAAGTGGGATTTAAACGTAGGGGTATGCTCGTAAATCACTTAGCTAAGCGTCATCCAGATGTCCCACCCGAGTCTGTACCAGAGCTTAGTTTGCCAATTCTGCGACAAACGAGAGATTATTATTGTCAATATTGTGACAAAGTTTACAAAAGTAGCAGCAAACGAAAAGCGCacataatgaaaaatcatccAGGTGCAGCCTTACCACCAAGCAATAGAAACAAGGAGTTCGACATTCCTGGTTTACCGAATCCAACGTTTAGCCAGGCTGCTGGTAGTATTAAAACTGCTCCACAGGGATGCCAGTGGTGCCACAAGCAGTATGCTAGCAAACCCGACAACAGCAACGAGGAGCCGAGCAGTGAAGCGGAATTTTTGAAGCCGCGCATTATACGTACAAACGGTACCAGTGGCGAGTCTTTACCtatcagcaacaacaacaataacggATTTGAATTGCTGACAAGTGGGCCACAGTTTGCTCGCGTGCGTGACATGCGCTGA
Protein Sequence
MDQGGPPEGAPVVIADPMDMTIIDKVCNESNWPDDNIVSSSTFCDNPRKLNNKLLFLTVSVEYVEDQARDFGRMYPYEQVSFSSRANSPLSDFEHRVSPHDPNMSSAARYSPTPVPLPSSPFHNSVVVLQEPSSPLISTSESAVRITNGYSSQLTDQSSNPSLSQSDNSEDFTDSTSDGLVSSVGNELMLIQGSNSELEASSTPLMLSGISASDLTLTRDFLVMQEDHINVMNPMKLNSSLEQNVNQIAETILPHDIDDETNAQISTMKIFKKFIEQPNQILDSNKKEVQWPKDQSIEDNSLWYNEDCDSTCTDVADCTLHSVCTIADQPVPSRAVATLPGLYLSIEKLPSSDIINAQSIEFGIFAKRNIRRRTQFGPIEGILRPYNGSKIEGLPLLLESKEEGDFFQIDVSDENSSNWMRFVRPAKTYEEQNLVISQQNDGIVFLTTRNIMPNEELKAGPSLEYGKRRNLPVLEVKFKNNLDSTVDFCTQSHITTGPLEIADEKVTENSNVDNLRNNCTKLQKKRKPTRSSFQKYVEVNEIKENDSSDISILRSVSKDFKYTGSPKLIDEDKEKENSPDSKLQLMEQEVTQSNQTDISEKNANVVSSSIYKCEICSKRFSTKLKFQQHCLVHGVKDNESLTCNVCLKTFLNNSSLSRHLKTHQKERQTLECPVCREAFGRVLTLKDFAETHLNQYETFTCPHCPKSFTSYALTRKHARAHHFDRKHECQFCLKCFPAADKLRMHLLKHSDRREFQCANCGKQFKRKDKLKDHVTRVHYTPKTNKDQLSSNNRAKKAIPKTNPGDCDRFIYKCRRCQVGFKRRGMLVNHLAKRHPDVPPESVPELSLPILRQTRDYYCQYCDKVYKSSSKRKAHIMKNHPGAALPPSNRNKEFDIPGLPNPTFSQAAGSIKTAPQGCQWCHKQYASKPDNSNEEPSSEAEFLKPRIIRTNGTSGESLPISNNNNNGFELLTSGPQFARVRDMR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00309747;
90% Identity
iTF_01037314;
80% Identity
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