Nlon001007.1
Basic Information
- Insect
- Nasonia longicornis
- Gene Symbol
- -
- Assembly
- GCA_000004795.1
- Location
- GL277950.1:6027149-6028727[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-07 0.00022 20.7 0.0 2 40 15 52 14 56 0.89
Sequence Information
- Coding Sequence
- ATGGGTCGCTACATACGGCAAACGACGAAAGGAAACTGGAATCCCGATCAACTAAAAAATGCCGTTGAAGCGGtgaaaaagggaaagaaaattcgcgcgtgcgcgaaaaaatacaaaatcccTGAAAGTACGCTGAGAAGGAggatgaaagaaaataatctcGACTCACCTATTATGGGTGTAAGTACAACCTTCACTCCGGAGCAAGAAAGGATTATTGTCGAGTACTTGAAAAACGTCTCCGGTTGGTTTCGCGGGCTGAACTCCATTCAGTGCAGAAAAATAGCCTTCGACACGGCGGAAAAGCTGAAGATAAAGCACAAgtttaacaaaaaacaaaagattgCGGGAAAAGATTGGTTTTGCGGCTTTTTAAAGCGAAATCCAGATTTCAGTATTCGCAAACCGGACGTGCAAAGCAATGAACAGTTTCAACAGTTTTATAAAAAGGAGTTGGATAAGTTTTACCATGATCTGAATCTCATCATCGagaaatatgaattttcatcagACAGAATTTATAATGTTCAAGAGACAGAGATTTACACAGTCAAGgTAAAAGAAAACACTGGTGATAAAAGTTTAAACTCTGAAGTGTCATGGGAGAGAGCAAACAGAACATCAGTAGCATGCGCCACAAATGCTGTTGGATCATTTGTACCTCCAATGTTTGTTTTTCCATTTGAAGACAAAATGCAGCTTATGAAAATAAGTGTACCCGAGGATGCAGTGGTTGAATGCAATTCCAATGGAAACGTAAATGAAGAGATGCATCTAATCTGGTTGAAGCATTTTGCTGAGATGGTCAATCCCACAAGAAGTGATCCAATTCTTCTCATACTCAACCCTCACAATGGTCATGCAAGTATAGATGCTTATGAATTCTGCAAAGCCAATCATATACATGTATTGACTTTACCGCCACATGCAGCTTTTCAAATGCAACCACTAAATGCAACAATATTCGTGCCTCTCAAGAGAGCTTATTATAGAGAGTGCGAAGCTTATATGAGAAACACTGGAACAAAAAAGATTTCAGTATATAAAATAGCAGATCTATTTACAAAAGCTTTGGATAAAACAGCCAGCATAGATAAGGCTATAAAAGGATTTAAATCAACCGGTATATGGCCTGTTAACCCATTGGCATTGGACGTAAAGAAGCTTAATCGCTGTACCAAAATTAATATCCATAGTAATGCTGCTAGGGATGGTGATGATTCTGCTGGTCAAAGAAGCTCTAACAGCAACTCCTCCGACACAAGTAGGACAAGCAGTAGTTCATCTGAAGATATTGATACTAGTGAAAGCAGTGACTCATCTGAGATCAGTGATCAAGATAGTGACTTGTGTGAAAATCGCTACCAAACTAGAACACGatgccaaaaaaaaagaaaatataattgttga
- Protein Sequence
- MGRYIRQTTKGNWNPDQLKNAVEAVKKGKKIRACAKKYKIPESTLRRRMKENNLDSPIMGVSTTFTPEQERIIVEYLKNVSGWFRGLNSIQCRKIAFDTAEKLKIKHKFNKKQKIAGKDWFCGFLKRNPDFSIRKPDVQSNEQFQQFYKKELDKFYHDLNLIIEKYEFSSDRIYNVQETEIYTVKVKENTGDKSLNSEVSWERANRTSVACATNAVGSFVPPMFVFPFEDKMQLMKISVPEDAVVECNSNGNVNEEMHLIWLKHFAEMVNPTRSDPILLILNPHNGHASIDAYEFCKANHIHVLTLPPHAAFQMQPLNATIFVPLKRAYYRECEAYMRNTGTKKISVYKIADLFTKALDKTASIDKAIKGFKSTGIWPVNPLALDVKKLNRCTKINIHSNAARDGDDSAGQRSSNSNSSDTSRTSSSSSEDIDTSESSDSSEISDQDSDLCENRYQTRTRCQKKRKYNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01036945; iTF_01035350; iTF_01486975; iTF_00287145; iTF_00286258;
- 90% Identity
- iTF_01036945;
- 80% Identity
- -