Nlon008798.1
Basic Information
- Insect
- Nasonia longicornis
- Gene Symbol
- lolal
- Assembly
- GCA_000004795.1
- Location
- GL277966.1:1144678-1146367[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-13 1.1e-10 40.8 0.1 1 38 342 380 342 384 0.94
Sequence Information
- Coding Sequence
- ATGAGTTCAGATCAGCAGTACTGTTTACGCTGGAACAACCACAGCCTCAACTTTGTAACTGTGTTCGAGTCTCTTCTGAAGGCAGAGGCTTTCACCGATGTCACGGTGGCTGCTGATGGTGTCCAGATAAAGTGCCATAAAATGGTACTCGCAGCCTGCTCAACCTACTTCCAGGAGCTGTTTGTTGGAAACCCTTGCGAGCACCCTGTCATTCTCCTTAGCAATGTCACGTTAAATGAGATCAAGGCCATCCTTGACTACATGTACAAGGGAGAGGTGAACGTCTCTCAAGAAGACCTCGCTGGTCTCCTCAAAGCTGCTTCCGACCTGAGGATTAAAGGTTTGGTAGAAGACCCAGACAAACACAAACGCAGGGAGGAGCCACCCACCAGGGTCACACCACCCCCAGCCAATAATCCCAGCCACAGTGCGACAAACAACCAGGCTCTCGGTAATGGGTACGTCTCACCCTTGCACATTCCTCCCCACATTCCTTCCCACATGCCCCCCTCCAATCACGCTTCGTTGAGCAAGTCGCCCATCGACAGGAGCCACATCCTCAAAAACGGGTGGGACGCCTCGGGGACTGCTGTGCCCGAATCCCCGCATCCCGTCTCTGGACCACCACCGCCACGAAGCCAACACTTAAATGCTGGCACATCACACCACAGCAACGAAATCAAGAGGGATAATTCACCCCTCAGCCGAAAGAAGCTCACCGCTATCGCACACGTCGGCGGAGACACGCCGATATTGAGAAACGTTCTGGGTCAGAGTCATCATCTGGAGCCCTCAGCGCTTGATAGACAGGAAGCGTCCTGCAGTACAAATAGTAATGGATCCTACCTCGAGTCGGACAGGAGGAGCAGCGCCGAGCTTTCCGAGTCCatggaggaggaagagaacaGGGGACAAAACAGCTCGCCGCCGTACCCGAACGTCAACCTCAACGTCATCGCCATGGCCAGCGGCAAAGGCAAATCTGGTGTGGGCAAGCCCGAATGGAAGCGCTACAAGCAGTACACGCGCGAGAACATCCAGGAGGCCATGGACGCTGTGAGGAATAAGAGGATGAGCGCGCTTCAGGCCGCTCGCAAGTACGGCGTCCCCTCGCGAACACTCTACGACAAACTCAAGAAGGCCGGCATCCTGCCCTCCCGGGGTGCGGGGGTCGCCCGTCAGCGATGCGAGCCGGCCGTCGGCGTCATGGACAACGGCAGCGCCCGGTTCCCCTACTCCAGCAGCGTCAACGGCAGCGTCTACGGTCATAGCGCCCTGTCCGAGAACGACAGCGATAACAACGGTATGCACAACGCACCCGTCGTTATGGACATGTCGACGCGCAGCCCCAGTCCAGCCCAGCCCCCCCAGCACTTCGTCGCGCCAGCCATCGTGCACCAGGACGACCAAGTCGAGGATCTCTCCATCGCCaggagtagcagcagcagcagcagaagtcgCGACAACACCACGCCCGTCATCGTGCCCTCAACCTCAGCGATAAAGAAGGAGCCAGAGGACACGGATATGGCTTGA
- Protein Sequence
- MSSDQQYCLRWNNHSLNFVTVFESLLKAEAFTDVTVAADGVQIKCHKMVLAACSTYFQELFVGNPCEHPVILLSNVTLNEIKAILDYMYKGEVNVSQEDLAGLLKAASDLRIKGLVEDPDKHKRREEPPTRVTPPPANNPSHSATNNQALGNGYVSPLHIPPHIPSHMPPSNHASLSKSPIDRSHILKNGWDASGTAVPESPHPVSGPPPPRSQHLNAGTSHHSNEIKRDNSPLSRKKLTAIAHVGGDTPILRNVLGQSHHLEPSALDRQEASCSTNSNGSYLESDRRSSAELSESMEEEENRGQNSSPPYPNVNLNVIAMASGKGKSGVGKPEWKRYKQYTRENIQEAMDAVRNKRMSALQAARKYGVPSRTLYDKLKKAGILPSRGAGVARQRCEPAVGVMDNGSARFPYSSSVNGSVYGHSALSENDSDNNGMHNAPVVMDMSTRSPSPAQPPQHFVAPAIVHQDDQVEDLSIARSSSSSSRSRDNTTPVIVPSTSAIKKEPEDTDMA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01035344;
- 90% Identity
- iTF_01035344;
- 80% Identity
- iTF_01036327;