Ngir012374.1
Basic Information
- Insect
- Nasonia giraulti
- Gene Symbol
- lolal
- Assembly
- GCA_000004775.1
- Location
- GL276289.1:1144837-1150636[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1e-13 1.1e-10 40.7 0.1 1 38 362 400 362 404 0.94
Sequence Information
- Coding Sequence
- atgcCGCCGACCTTGTGCTTCGCTACGACACCTTTCGCAGATTCCTCAGAATTCAGCACCATGAGTTCAGATCAGCAGTACTGTTTACGCTGGAACAACCACAGCCTCAACTTTGTAACTGTGTTCGAGTCTCTTCTGAAGGCAGAGGCTTTCACCGATGTCACGGTGGCTGCTGATGGTGTGCAGATAAAGTGCCATAAAATGGTACTCGCAGCCTGCTCAACCTACTTCCAGGAGCTGTTTGTTGGAAACCCTTGCGAGCACCCTGTCATTCTCCTTAGCAATGTCACGTTAAATGAGATCAAGGCCATCCTTGACTACATGTACAAGGGAGAGGTGAACGTCTCTCAAGAAGACCTCGCTGGTCTCCTCAAAGCTGCTTCCGACCTGAGGATTAAAGGTTTGGTAGAAGACCCGGACAAACACAAACGCAGGGAGGAGCCACCCACCAGGGTCACACCACCCCCAGCCAATAATCCCAGCCACAGTGCGACAAACAACCAGGCTCTCGGTAATGGGTATGTCTCACCCTTGCACATTCCTCCCCACATTCCTCCCCACATTCCCCCCTCCAATCACGCTTCCTTGAGCAAGTCGCCCATCGACAGGAGCCACATCCTCAAAAACGGGTGGGACGCCTCGGGAACTGCTGTGCCCGAATCCCCGCATCCCGTCTCTGGACCACCACCGCCACGAAGCCAACACTTAAATGCTGGCACATCACACCATAGCAACGAAATCAAGAGGGATAATTCACCCCTCAGCCGAAAGAAGCTCACCGCTATCGCACACGTCGGCGGAGACACGCCGATATTGAGAAACGTTCTGGGTCAGAGTCATCATTTGGAGCCCTCAGCGCTTGATAGACAGGAAGCGTCCTGCAGTACAAATAGTAATGGATCCTACCTCGAGTCGGACAGGAGGAGCAGCGCCGAGCTTTCCGAGTCCatggaggaggaagagaacAGGGGACAAAACAGCTCACCGCCGTACCCGAACGTCAACCTCAACGTCATCGCCATGGCCAGCGGCAAAGGCAAATCTGGCGTGGGCAAGCCCGAATGGAAGCGCTACAAGcagtacacgcgcgagaacaTCCAGGAGGCCATGGACGCTGTGAGGAATAAGAGGATGAGCGCGCTTCAGGCCGCTCGCAAGTACGGCGTCCCCTCGCGAACACTCTACGACAAACTCAAGAAGGCCGGCATCCTGCCCTCCCGGGGTGCGGGGGTCGCCCGTCAGCGATGCGAGCCGGCCGTCGGCGTCATGGACAACGGCAGCGCCCGGTTCCCCTACTCCAGCAGCGTCAACGGCAGCGTCTACGGTCATAGCGCCCTGTCCGAGAACGACAGCGATAACAACGGTATGCACAACGCACCCGTCGTTATGGACATGTCGACGCGCAGCCCCAGTCCAGCCCAGCCCCCCCAGCACTTCGTCGCGCCAGCCATCGTGCACCAGGACGACCAAGTCGAGGATCTCTCCATCGCCAGGAGTAGNgagcagcagcagaagtcgCGACAACACCACGCCCGTCATCGTGCCCTCAACCTCAGCGATAAAGAAGGAGCCAGAGGACACGGATATGGCTTGACCTGCGGGCCCCAGGATTCGCGCCGCTGGACTCTTCGACGAGCTGATCAGCGTGGCTGCCGCCAAGCTTAA
- Protein Sequence
- MPPTLCFATTPFADSSEFSTMSSDQQYCLRWNNHSLNFVTVFESLLKAEAFTDVTVAADGVQIKCHKMVLAACSTYFQELFVGNPCEHPVILLSNVTLNEIKAILDYMYKGEVNVSQEDLAGLLKAASDLRIKGLVEDPDKHKRREEPPTRVTPPPANNPSHSATNNQALGNGYVSPLHIPPHIPPHIPPSNHASLSKSPIDRSHILKNGWDASGTAVPESPHPVSGPPPPRSQHLNAGTSHHSNEIKRDNSPLSRKKLTAIAHVGGDTPILRNVLGQSHHLEPSALDRQEASCSTNSNGSYLESDRRSSAELSESMEEEENRGQNSSPPYPNVNLNVIAMASGKGKSGVGKPEWKRYKQYTRENIQEAMDAVRNKRMSALQAARKYGVPSRTLYDKLKKAGILPSRGAGVARQRCEPAVGVMDNGSARFPYSSSVNGSVYGHSALSENDSDNNGMHNAPVVMDMSTRSPSPAQPPQHFVAPAIVHQDDQVEDLSIARSXEQQQKSRQHHARHRALNLSDKEGARGHGYGLTCGPQDSRRWTLRRADQRGCRQA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01036327; iTF_01035538; iTF_01036119;
- 90% Identity
- iTF_01036327; iTF_01035538; iTF_01036119;
- 80% Identity
- iTF_01035538;