Nlon007018.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nasonia longicornis
Gene Symbol
RFX7
Assembly
GCA_000004795.1
Location
GL277952.1:4800175-4804349[-]

Transcription Factor Domain

TF Family
RFX
Domain
RFX domain
PFAM
PF02257
TF Group
Basic Domians group
Description
RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.2e-33 9.5e-30 102.9 0.1 3 78 172 247 170 248 0.97

Sequence Information

Coding Sequence
ATGAGTGCCCAGAGCCAGGGTTGCTCGACGCCGATCAAGCTCGAgcccgctgctgctcgagtcAAGAAAGAGCAGCTCGAGATGCTGGCTGATGCCCAGGCCACCACCGATGCCAGGCTccacctgcagcagcagccaaggcTTACTGGAGTCAACTGCATCACCCCCTCCGCCCAGTCTGTCCTGCCTTCGCCCTCGCCCTCACCCTCCCTTGCCAATGGCTACCCTACCACAGACTTGCTGCATGACATCCTCAGGGCAAGTAAATTGAACAGCCTGGCTCATCATACTCCTGCCACCAAGAATGAAAAGATACGCCTCATGATTGAGGACAGCATAAGCGAAGAGTCAAGATCTCGGGTGCATGATATTTTTTCCCAAGTTGAGCAGCTGAAATTGGAAGAGAAGTTATTGCTTTACCTCAAGCTTCCAATATCTCTGACAAATCCCAATGGTACCGTGGATCCTCTGAGGCAACCTTTGAATCCACTGGGTAATCGATATGAGATTTATCAGACCATAATGTGGATTAAAACACACCTTGAGGAGGATCCAGAAGTTTCATTACCAAAGCAAGAAGTCTACGATGAATACAATATCTTTTGTTCGAAAAACTCCATGAAGCCACTTTCAACTGCTGACTTTGGAAAAGTCATGAAACAAGTTTATCCTCGGGTTCGACCTCGTAGACTGGGTACACGTGGCAATTCTCGGTATTGCTATGCTGGAATGCGAAAGAGAATCAAGCTAGACCCTCCAACATTACCTTCAGCAACCGCTACAGAAGTGGGTGAAGATGCAGAGCACAATGTTACTGAAGAAATGCTGGGAGCTGCTTCAACAATCATTCGGGAATGGGCagaatttttattggaaaCCAAGTTTCCAACACTCTGTGCTTTGGGAAAGTATCTTGTTAACAATCTTTATGTTGATAGTCGATCTTTGGCTGCTGTTTGTATACTGAGTGCTTCAGGAGAAGCTCAACCTGTGACAAAAAAAGATGAGAGTCCAGGATTATCAGCAACGCCTACTTTAGTAAAGATGGGAAAGCTCAGGGAAGCTCAACTTCAACTGCAGCGAAAACTTCAACAACGAGAGCAAGTGCGCGATCTGAAACATCGacatcttgaaaatgttttgcaGagtcaaaacaaagagaaaactGTTGATCAGAATAACGAGGGCGTCGGAAGTGGGAACAAAAAAGGTAAAAAGGGTAAAGCTAATGTGAATCACCTGGCACAAGTGGTACAATCGATTCAAGACGAGCAAAATAGTAGCACTTCTAGGCTAGTGACGAGTGATAGCGCAATTTCGCCAAGAGAAATAAAGACAAAATATACGCGGAAACGTGCAAGCTCGAGTGTAGCCCTGCAGGCCAGCAGCGAATCGAGTCCCGAGAAGCAGTTGAAACTTGTAGAGGCTCAGCAAAATGCCTTGGAAAGTGTAACGCGGTCTTCAACCCCGGGATCTAGGCTCTCTTCAGCTCCAAACCAGCAGTCTGCAAAGATTTCAGTGATACTAGCTAATAATCCGAAAGCCGCCAAGAGCAACAAGACTACCGGCGAAGCTGCCGTCGCCCCTCTCGTCAATCAGCCCATTAAAAGCTGTGATAAAGAATTATCTCTGTGTTCCAACAATTACTCCAAGTCGAACGGCTACTCCAACGGATCTGATTTACCGAGAAAAACGAATTTATTGACAGAGAATGAAATTCGCCTCTTGCAAGAGAACTCGAGTCTTGCCAGCGTAAAAGGCAAGCTTGGCTCCATCGACAGTGATGCTCTTAATGATTATTTGAACGGAGGTAATAACTCTCAAGAACCGGAAGAAGAATTGATGTTATATTTTCAGCAAAGCAACTCCTCAAGCTCGGATATGGAGCTAAGCGGAGTTGTCGCTGAAACAGAATTGGCCTCTAGGCAGGACAAAGTATCCCAATTGAGAATCATTCTGCAAGAAAATCTGAAAGATTCAGTATTACCGGCCAAAAAAGATAGCTTGCAGAACGTAGTCGCAAATGAAAAGCAACAAACTTTGCAAAAGCACAATTTGATACTACCGACTCTgctcaataaaaacaataacgtTAATACAAGACGTCGAGTCAGTTTCGAGACGAATACCGTCGAGCAATCTCAGGATAATGGAGGCAATGCAAGCGCGCTCAACAGCAACACCGTCCCGCAAAGCCCCAACACTCGACGAAGAATCTTCAACTTTACGCCCATTTCACCTGGTCCACAATCCCCCATCAATGGACGTGCTTCGAAATCGAATTCTGCGAATGCTAGTCCCTTCGTGTCACCTCGAAACACGCCAGTGCCACGTTCCAGGAGCAATTTGCAAGGAAGTTGTCGGTCTCGGGGCTCgcaaaaaattctctctcgctcgatatCATGTAACGTACCTTTCACGAGCAACAAAAATGAAACCTTTATTGTGCCTACTACAGGATCCGAAATAAATAGGCACGTTCATTCGCCTCTTGCCGTCAACAACAAAGCGTCTCAAGCTTCTCAGCTTGGACTGCAATCTCTTCAGCAGGATCCAGTGCCCAAGTCGCAAAATCTGCCTTGCGCTCCCTTTCTCACTGATCTCGCTTCTCAAGAGCCTCAACTGCTCATCAATTACCCAAGCCAAGAAAATCTTCAAGAAATCAAGAATGTCTATCAGCAGCAGAAGCATCAACCGACCGATCAAGAAATTAGTGATTTATTGCAAAGTGAAAGCGAAAAGCAGCAGTTTGTCAAGGACCAGCTCTTTCGCTCTCAATCTGTACCGCTACACAGGATGGTGAATCCTGCTCTTCTCTCGCCAATCTCATCGCATCATACGCCAACGTTCCTTAGTCACAGTTTTAATCCGTCTACCAATAGTTCAATAGCTCCAACGCCAGTTCCGAGTGAATTCAACGATTTTGGTTCGATAAGCCAGTGCGACAGCACGAGCTACTTGATTGAGGTAGATCCACTAGTCACCGCTGGTCAACCGTTCCTTATGGAGGACAAAGAGATGATTCCTGATAACTTGAATAACATATTTGACATGCTAAATCAAGACTCCGAAATCTTGACAGAGAGCTCTACTGACAAGGAGCGAACTGAAACTTCAGATCCGATATTGATGAATTCTTTATCTAGTTTAAACGATCGTGCGCTTTTGGAGAGTTCCAGCAGCGAGCTCTTGGCTAACTGGACAAATGGAAATACTGCAGGCAACAACAGTAACAGTAACAATACTTGGGTGAATTCTGCATCAAATAATGCTCCCAAGATTCTGCATTCGCGCTCTTATCCAAACACGCCTTTGCCTATACCGAATTCCTCTTTCACGGTTCAATATCCGGAAGATAGTAACGGTTCCAAATCATACCCGACAACGCCATTGCATAATTTACAGCAGCAGGAAACTTGGACGGAGAGTAACGAGCCAATGCTGTTTAGTCCGACACTCAATACACTGAATCTTCACAGTCAGACTGGGAATATTGACAACGTATGTCCCACTAACGTTGAGTGCAATGTGGGCGATTTCTTGGAACCCGACATGACGAACGACGATACCGATGATCTTGGCTCCCTCGGTAATTTCGAGGGTCTGCAGGATGTCGGTGCACTCTCGCCTTTGTTTACAGAAGTTGTGGAATCAAATCACTGA
Protein Sequence
MSAQSQGCSTPIKLEPAAARVKKEQLEMLADAQATTDARLHLQQQPRLTGVNCITPSAQSVLPSPSPSPSLANGYPTTDLLHDILRASKLNSLAHHTPATKNEKIRLMIEDSISEESRSRVHDIFSQVEQLKLEEKLLLYLKLPISLTNPNGTVDPLRQPLNPLGNRYEIYQTIMWIKTHLEEDPEVSLPKQEVYDEYNIFCSKNSMKPLSTADFGKVMKQVYPRVRPRRLGTRGNSRYCYAGMRKRIKLDPPTLPSATATEVGEDAEHNVTEEMLGAASTIIREWAEFLLETKFPTLCALGKYLVNNLYVDSRSLAAVCILSASGEAQPVTKKDESPGLSATPTLVKMGKLREAQLQLQRKLQQREQVRDLKHRHLENVLQSQNKEKTVDQNNEGVGSGNKKGKKGKANVNHLAQVVQSIQDEQNSSTSRLVTSDSAISPREIKTKYTRKRASSSVALQASSESSPEKQLKLVEAQQNALESVTRSSTPGSRLSSAPNQQSAKISVILANNPKAAKSNKTTGEAAVAPLVNQPIKSCDKELSLCSNNYSKSNGYSNGSDLPRKTNLLTENEIRLLQENSSLASVKGKLGSIDSDALNDYLNGGNNSQEPEEELMLYFQQSNSSSSDMELSGVVAETELASRQDKVSQLRIILQENLKDSVLPAKKDSLQNVVANEKQQTLQKHNLILPTLLNKNNNVNTRRRVSFETNTVEQSQDNGGNASALNSNTVPQSPNTRRRIFNFTPISPGPQSPINGRASKSNSANASPFVSPRNTPVPRSRSNLQGSCRSRGSQKILSRSISCNVPFTSNKNETFIVPTTGSEINRHVHSPLAVNNKASQASQLGLQSLQQDPVPKSQNLPCAPFLTDLASQEPQLLINYPSQENLQEIKNVYQQQKHQPTDQEISDLLQSESEKQQFVKDQLFRSQSVPLHRMVNPALLSPISSHHTPTFLSHSFNPSTNSSIAPTPVPSEFNDFGSISQCDSTSYLIEVDPLVTAGQPFLMEDKEMIPDNLNNIFDMLNQDSEILTESSTDKERTETSDPILMNSLSSLNDRALLESSSSELLANWTNGNTAGNNSNSNNTWVNSASNNAPKILHSRSYPNTPLPIPNSSFTVQYPEDSNGSKSYPTTPLHNLQQQETWTESNEPMLFSPTLNTLNLHSQTGNIDNVCPTNVECNVGDFLEPDMTNDDTDDLGSLGNFEGLQDVGALSPLFTEVVESNH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01035184; iTF_01036765; iTF_01274220; iTF_00286932; iTF_00143618; iTF_00286073;
90% Identity
iTF_00286073;
80% Identity
-