Basic Information

Insect: Napeogenes sylphis
Gene Symbol: -
Assembly: GCA_959347405.1
Location: OY365778.1:5318924-5327058[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.006 0.89 11.5 3.2 1 23 287 309 287 309 0.98

2 12 1.6e-05 0.0024 19.6 0.5 2 23 317 338 316 338 0.94

3 12 0.26 38 6.4 1.3 1 23 342 364 342 364 0.96

4 12 0.00073 0.11 14.4 2.0 1 23 369 392 369 392 0.98

5 12 0.0073 1.1 11.2 0.1 1 23 396 419 396 419 0.95

6 12 0.0052 0.77 11.7 0.1 2 21 435 454 435 459 0.92

7 12 0.00016 0.024 16.4 0.8 3 23 469 490 469 490 0.98

8 12 0.11 17 7.5 0.2 3 23 511 532 510 532 0.96

9 12 6.6e-06 0.00098 20.8 0.5 1 23 543 565 543 565 0.98

10 12 8.2e-06 0.0012 20.5 2.5 1 23 571 593 571 593 0.99

11 12 0.0025 0.37 12.7 1.3 1 23 599 621 599 621 0.98

12 12 3e-05 0.0045 18.7 0.3 1 23 627 650 627 650 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.006	0.89	11.5	3.2	1	23	287	309	287	309	0.98
2	12	1.6e-05	0.0024	19.6	0.5	2	23	317	338	316	338	0.94
3	12	0.26	38	6.4	1.3	1	23	342	364	342	364	0.96
4	12	0.00073	0.11	14.4	2.0	1	23	369	392	369	392	0.98
5	12	0.0073	1.1	11.2	0.1	1	23	396	419	396	419	0.95
6	12	0.0052	0.77	11.7	0.1	2	21	435	454	435	459	0.92
7	12	0.00016	0.024	16.4	0.8	3	23	469	490	469	490	0.98
8	12	0.11	17	7.5	0.2	3	23	511	532	510	532	0.96
9	12	6.6e-06	0.00098	20.8	0.5	1	23	543	565	543	565	0.98
10	12	8.2e-06	0.0012	20.5	2.5	1	23	571	593	571	593	0.99
11	12	0.0025	0.37	12.7	1.3	1	23	599	621	599	621	0.98
12	12	3e-05	0.0045	18.7	0.3	1	23	627	650	627	650	0.98

Sequence Information

Coding Sequence: atggaAGAGCTGAAAGTGTGCAGAATATGTCTCGCTATGGATGTAAAAATGCACGATCTGTCCACTTACCCTCTGGATATctgttatgaaaatttaatcgGTTCTAATgtACTGAAAATGGTGCAATTACAGGGGTATGCATGTTATATGTGTGCACCGCTACTGAAAAAATATCACTTGTTTAAGGAAAAGTGTCTACAAGGACAGTCGGCATTGTATGGTTTGCTGAACTCTTTTGGAAatATAACCAGTGAAAGTATAAGtcaaataaacaaagaaaaccTTTGCTCTAGTTTATCTAGTTTCAAAGTATACAACATTGACATAGACTCCAATGAAGATAAAAGTGAATTTAAAAGAGAACCAGCCGATGTTCAAGTAAGAATATATTATGAGGACAGTGAGATTCTGAAGCAAGAAGTAGTTCAAGACAGAGCATTTaatgattttgaaaatataaagcaAGAAGACGATTTTTATGACTTTAGCGTATTATCTAGTGATGATGATGAACCGTTATCTGTACATAAAGAGAAGAAAGAAGAGACTGtcaaaaagaaaaagagaagTAAAATAGAAGAGAATATTGAAACTGAAGTTGATGAAGCCAATGCGAGTACAGTTCTCCAAGAATTGTAtgatattattacaacaaaaaaaagggGAAGACCTAAAAAGGCTGAAATTAGAAAGAAAGATACCAAAAAGGCAAAACCTCGTCGAACTGCCAATACAGGAGGGGTGGATGACGACGGTCTGGATATAGAGGATTACTgcactattattaaattaactGAAGAAGAACAAAAAGAAGAGGTGAATCAACGACAACAGTCTCTCAACTATATGAACGCGGTGTATAAATGTAATCTATGCTACAAGGGGTTCATTGACACACATGCCTGGAAACACCATGTCGCTAAACACGATCCGGCCGCAGGTGATATTGAGTGTCCAGTATGTAAGATTCGGTTCAAAACTAAACGCAACTTACAGAAGCACGCCGCTAACCATGGGAAGAAATTTGCTTGTAAATCTTGTTCTTATGTATCTAAAACCAcAACTCAAGCCAAACAACACCAACAATGGCATAAAGGAGTTACATACAAATGTCAGCACTGCGACGAAGTTTCTACTAAGTGGACGTCATACCTAAGTCACGTGCGCATCAAACACCCGTCACAGTACATCTGCGGCGCCTGCGGGTACTCCTTCGTGAGCCGACTGGGACTCAACATGCACCGGACCATGATGCACAAGGACCTCGTCGATAATGAAACCCCCGACAGCAAGGAGGCGCCGTACTGCGAGGACTGCGACGTGAAGTTCATCAGCGTGGAGGCCTACAAGAGACACATGGTCACCTCGGTCAAACACACGCAGAGCACCGACTTTGGTACGGGCTGTCGCGAGTGCGGAGAGACGTTCCCGGACGCGGAGGCGCTGCGCCTGCATCACCGCCGCAAGCACTCGCGGCACAGACCTAAGAACTACGGGAAGAAACCCTCGCGCCTCGCCTGGCCGGCGCCCTGCGAACACTGTTCCGAAGTCATTCCAAATGCTCGAGAGTATTGGTCGCACTTCCGACGCGTTCATCCAGATAAGACTTACCCTACACAGAAGAATTTCGTATGCGATATATGCGGGAAGAGTTTTCGGggCAACGCGTTCCTAGTTTACCATAAGCGTACGCACACGTCTGAACGTACATACAAGTGCGGTCAATGCCCTAAGGCCTTCCACAACCGAAACAACCTTCAGATGCACGAGCGCACTCATTCTGACGCGCGGCCCTATCCCTGCGCGCTCTGCGACAAGGCCTTCAAGTGCAAGGGCGCGCTTGACAGACATTTCAGAAGTCATAGCGGTGAGAAGCCGTACATGTGCCAGGTGTGTGGGAAGGCTTTCGCTCAGTCCAACAGCCGCAAGCTGCACGTGCGTACGGTGCACCTCAAGCAGCCCTCGCCGTACGTGTCGCGCGCCCGCCTCGAGCGACGTGCCCGCGCTCACAAGGACCACGCCCCCTCCACCCACTATCTGTACTGA
Protein Sequence: MEELKVCRICLAMDVKMHDLSTYPLDICYENLIGSNVLKMVQLQGYACYMCAPLLKKYHLFKEKCLQGQSALYGLLNSFGNITSESISQINKENLCSSLSSFKVYNIDIDSNEDKSEFKREPADVQVRIYYEDSEILKQEVVQDRAFNDFENIKQEDDFYDFSVLSSDDDEPLSVHKEKKEETVKKKKRSKIEENIETEVDEANASTVLQELYDIITTKKRGRPKKAEIRKKDTKKAKPRRTANTGGVDDDGLDIEDYCTIIKLTEEEQKEEVNQRQQSLNYMNAVYKCNLCYKGFIDTHAWKHHVAKHDPAAGDIECPVCKIRFKTKRNLQKHAANHGKKFACKSCSYVSKTTTQAKQHQQWHKGVTYKCQHCDEVSTKWTSYLSHVRIKHPSQYICGACGYSFVSRLGLNMHRTMMHKDLVDNETPDSKEAPYCEDCDVKFISVEAYKRHMVTSVKHTQSTDFGTGCRECGETFPDAEALRLHHRRKHSRHRPKNYGKKPSRLAWPAPCEHCSEVIPNAREYWSHFRRVHPDKTYPTQKNFVCDICGKSFRGNAFLVYHKRTHTSERTYKCGQCPKAFHNRNNLQMHERTHSDARPYPCALCDKAFKCKGALDRHFRSHSGEKPYMCQVCGKAFAQSNSRKLHVRTVHLKQPSPYVSRARLERRARAHKDHAPSTHYLY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00461775;
90% Identity: iTF_00960347;
80% Identity: -