Mper006972.1
Basic Information
- Insect
- Myzus persicae
- Gene Symbol
- -
- Assembly
- GCA_001856785.1
- Location
- NW:11765-17297[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00022 3.2 7.7 0.1 20 44 219 243 212 247 0.82 2 3 2.8e-06 0.041 13.7 0.3 18 45 245 272 243 276 0.88 3 3 2e-06 0.029 14.2 0.1 21 44 276 299 272 303 0.91
Sequence Information
- Coding Sequence
- ATGGAACCATTCAGAATTGCAATTGATAATTGCACAATGGATTCCAAttCTAAAGTTATGCcatttcaacataatatgatatgtggTGATCAAAAATTTCATGGAAATATGGAAGAGGAAATTATTGATGATCAAGTATTGAATGGTATTATAAAAGAGGAAATTATAGAAGACACAGACCATGTCAGTGATggtcaattatttcaaataggTTCCGGAGTTATGCCATTCCAACCTAATTTGATGTATGGTGATCAAGAACTTCATGGAAATGTGGAAGAGGATATTATTGATGATCAAGTATTTAATGGCAATATTCAAGAGGAAATTATAGAAGACACAGACCATAATAGTGGAGGTCAATTATTTCTACTAGGaactatAGTTGAAttagtaaaagtaaattttattgaCGGATCGGAAATTAAAGGAACAGTCTCCAACGATAGCAAGTCTTCAGGATTACTGGCTCGTATGAAGACATCTAACTGCTTAAGGGAAAATACATTGATCCATAactgtaataaaaacatttctacAACATCCAATGTAACTGTTACAAAGAAACACAACACAAAAAAAGAGCACAAATGCAATGTCTGTGATAAACTGTTTCCTTATAGATCAATATTAATTAGACATTCAAGGACACATACTGGAGAAAAGCCGTATGCATGTGCTATTTGTTTTAAACCATTTggttataaatcaaatttaagacTCCATACCAGAAGACATACTGGAGAAAAGCCGTATGCATGTGCTATTTGTTTTAAACCATTTAGTCGTAAATCAAATTTAAGACGCCATACCAGAATACATACTGGAGAAAAGCCGTATCAATgtgatatttgttataaaaagttTACCAACGGATCAAATTTAAGACGCCATACAAGAAAACATTCTGGAGAAGATATGCTGTATCTGTGA
- Protein Sequence
- MEPFRIAIDNCTMDSNSKVMPFQHNMICGDQKFHGNMEEEIIDDQVLNGIIKEEIIEDTDHVSDGQLFQIGSGVMPFQPNLMYGDQELHGNVEEDIIDDQVFNGNIQEEIIEDTDHNSGGQLFLLGTIVELVKVNFIDGSEIKGTVSNDSKSSGLLARMKTSNCLRENTLIHNCNKNISTTSNVTVTKKHNTKKEHKCNVCDKLFPYRSILIRHSRTHTGEKPYACAICFKPFGYKSNLRLHTRRHTGEKPYACAICFKPFSRKSNLRRHTRIHTGEKPYQCDICYKKFTNGSNLRRHTRKHSGEDMLYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01033282;
- 90% Identity
- iTF_01033282;
- 80% Identity
- iTF_01033282;