Mcer013212.1
Basic Information
- Insect
- Myzus cerasi
- Gene Symbol
- -
- Assembly
- None
- Location
- Mc2336:6203-7330[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.35 3.3e+03 -1.1 0.1 20 31 89 100 77 115 0.79 2 10 0.0063 60 4.5 0.0 20 43 117 140 110 151 0.82 3 10 0.29 2.7e+03 -0.8 0.2 20 31 145 156 138 170 0.77 4 10 0.00062 5.8 7.7 0.0 16 43 169 196 163 201 0.88 5 10 0.0035 33 5.3 0.0 21 43 202 224 197 233 0.84 6 10 0.3 2.8e+03 -0.9 0.2 20 31 229 240 224 254 0.76 7 10 0.00061 5.7 7.8 0.0 16 43 253 280 245 285 0.88 8 10 0.0088 83 4.1 0.1 20 43 285 308 280 312 0.86 9 10 0.0078 73 4.2 0.0 21 43 314 336 309 344 0.87 10 10 0.074 6.9e+02 1.1 0.0 22 44 343 365 337 369 0.83
Sequence Information
- Coding Sequence
- ATGAATGATTTAACTTGTTGTCCAGGTGTGTTACAATACTCGAGTGACGTTTCTGATAATTTTTTTATTTACAGTCTGACCACACACAAGCGCATAAGTACAAAGAAGAAACCCGACCTGTGCGATGGGTGCGACAAGTCGTTCGGTCGAAAAGAGCATTTGGCAGTTCATCAATGCACGCACACTGATGAGAAACCGTACGAGTGTGAGGCATGCGAAAAGCCGTTCAACGAAAAAGGCCATTTGACGATTCGACGAAAGCTCAGCGGTGATAGACCTTACGCGTGCGATATATGCGACAAATCATTCACTAAAAGAATCACGTTGACCGTTCATCGACGCACGCACACCGGTGAGAAACCGTACGCGTGTGACATTTGCGACAAGTCGTTTGGCCAAATTAGCAACTTGACGATTCATCGACGGACCCATACGGGTGAAAAACCGTACGCGTGCGATGTATGCGACATGTCGTTCGGTAAAAGGGTAGATTTGACGAATCACCGTCGAAAACACACGGGCGAGAAACCGTACGCGTGCGACGTGTGTGACATGTCGTTCGGTCAAAGTTGGAATTTGACGAATCATCGACGGACCCACACGGGTGAGAAACCGTACGCATGCGATGTATGCGACAAGTTGTTCAGCCAAAATAGCAACTTGACGGTTCATCGACGGACCCATACGGGTGAAAAACCGTACGCGTGCGATGTATGCGACATGTCGTTCGGTAAAAGGGTAGACTTGACGAATCACCGTCGAAAACACACGGGCGAGAAACCGTACGCGTGCGACGTGTGTGACATGTCGTTCGGTCAAAGTTGGAATTTGACGAATCATCGACGGACCCACACGGGTGAGAAACCGTACGCATGCGATGTATGCGACAAGTCGTTCAGCCAAAATAGCAACTTGACAGTTCATCGACGGACCCATACGGGTGAAAAACCGTACGCGTGCGATGTATGCGACATGTCGTTCAGCCAAAATAGCAACTTGACGGTTCATCGACGGACCCACAGTGGTGAGAAACTGTACGAGTGCAGTGTATGCGAAAAGTCTTTCAAAATAAGTGGTAATTTGAAAGTACATATGCGGACGCACAGTGATCGGGATTTAGATCAATGA
- Protein Sequence
- MNDLTCCPGVLQYSSDVSDNFFIYSLTTHKRISTKKKPDLCDGCDKSFGRKEHLAVHQCTHTDEKPYECEACEKPFNEKGHLTIRRKLSGDRPYACDICDKSFTKRITLTVHRRTHTGEKPYACDICDKSFGQISNLTIHRRTHTGEKPYACDVCDMSFGKRVDLTNHRRKHTGEKPYACDVCDMSFGQSWNLTNHRRTHTGEKPYACDVCDKLFSQNSNLTVHRRTHTGEKPYACDVCDMSFGKRVDLTNHRRKHTGEKPYACDVCDMSFGQSWNLTNHRRTHTGEKPYACDVCDKSFSQNSNLTVHRRTHTGEKPYACDVCDMSFSQNSNLTVHRRTHSGEKLYECSVCEKSFKISGNLKVHMRTHSDRDLDQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01032345;
- 90% Identity
- iTF_01032345;
- 80% Identity
- iTF_01032345;