Mcer011588.1
Basic Information
- Insect
- Myzus cerasi
- Gene Symbol
- -
- Assembly
- None
- Location
- Mc1173:5229-8159[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3.3 4.4e+02 2.3 0.7 2 10 125 133 124 135 0.91 2 17 0.031 4.2 8.7 0.1 2 23 148 167 147 167 0.87 3 17 0.002 0.27 12.4 0.1 1 23 179 202 179 202 0.98 4 17 0.23 31 5.9 0.5 1 20 247 266 247 268 0.94 5 17 0.52 70 4.8 1.6 3 17 275 289 274 295 0.76 6 17 0.11 15 6.9 0.6 2 23 306 328 305 328 0.94 7 17 1.2e-05 0.0016 19.4 0.4 2 23 335 356 335 356 0.97 8 17 0.0017 0.24 12.6 0.5 1 23 362 384 362 384 0.95 9 17 5.9e-05 0.008 17.2 2.3 1 23 390 412 390 412 0.99 10 17 0.24 33 5.8 0.0 1 23 423 446 423 446 0.85 11 17 0.079 11 7.4 0.5 2 23 468 490 467 490 0.92 12 17 0.0038 0.51 11.5 1.5 1 23 501 523 501 523 0.97 13 17 0.072 9.7 7.5 3.3 1 23 598 621 598 621 0.97 14 17 0.016 2.2 9.6 0.7 1 23 634 657 634 657 0.94 15 17 2.2e-05 0.0029 18.6 3.6 1 23 667 689 667 689 0.96 16 17 0.1 13 7.1 0.2 2 23 761 782 760 782 0.95 17 17 0.00038 0.051 14.7 1.3 2 23 795 816 794 816 0.95
Sequence Information
- Coding Sequence
- ATGCCAATCAACGTGGGACTTCCGACGAAATCCTGTTCCGGACAGCCGGATCTACGGAAACCCCGGAGACGTCGCCACTATCCGGCGTTGCGTCGTCACCGGACATCGTTTGACCTGACAAATCAAGTGATCGTTTACTTCGACCCGGACGGCAGCGGCAGATGCGAAGTGGTTGGCGGCAGTGGCGGCGACGAGGAGTCAGCTCGCGAAGGACGAAAGTCCGCCGGACTCTCTGCGGACACCAGCCGCAAAGGCAGGCCCAAGGGATCAAAGAACAAGTCTCCGGCATCGCCTTCGGCCCCGTCGTTTTCCGGCTCGTTCAACTACAGCTGCGAGAAGAGGTTGCTAACGTACAAGTTCGCTGGCCCGGTCAAGTGCAAGTCGTGCGATCGGACGTTCGACGGTGACCCTGTGGTCCACTGTCAGGAGCACCACAGGTCCGTTTGTCCCATATGCGGCCGCACGTACCGGCCACCGCTGACCACGCACATCAAGTCACACGGCACCCGACACGTGTTGCTGACCGTTTCGTGTTACGAGTGTTACGTGTGCAAGGAGAAGTTCGGCAACGCGCCGACCATGGCCGAGCACTTGCGGACCGAACACCGAGACATCGCCACCACCGCGAAGTGCTCCCTATGTGACGACACCGCCGCCGCGTTCGCGACCGTCGAAGCAGCCATTGACCACCTAGTGGACGCGCACTGTCCGCGCAAGAAGTTCAGCCACCCTACCCTGTATCGGTGCAGGGTGTGTTTGGCGGGGTTCAAGAGTCAGATCAACGTGCTGCGGCACGCGTGCAACAAGATCAAGTCACCGCATTGTGTGCAGTGCGGCAAGACGTTCCCGTCCAAGATGCGGTACGCGTTCCATCTGCAGTTCCACGAGCACCCGAAGTGGGCGACGATGCACTTGCACTGCGACCTATGCCTGGCCGAGTTCGACGACGAGTACCAACTGTACGACCACATCCGGTTTCGGCACGAGCTGCACGACAAGGCGGTATGCGAGGTGTGCGGTCGGACGTTCAAGTCGTCCATGGGCCTGAACATCCACCGCCGTTATCACAACGGGTCTCGGGACTTTGCGTGCGGGTCGTGCGACAAGTCGTTCCTGAACAAGTCCACGCTCCGGGAGCACGAGATCTCGCACATGGACGTCAAGCCGTTCCAATGTCACATATGTGGCCAGTACCTGAGTCGGGCGTCTAGGCTCCGGTCGCACGTCAAGACCCACCGGGCCGCCGAGTCGACCGACCAGCTGTGCTACAGCTGCGGCCACTGTGGTTACGTGGCGCCCAACCCGACCGCGGTCGCCGAACACGCCGGCAAGATGCACTGCGATGACACTGCACACCCGACGCCGAACGAATGCTACGCACTGCAACTGTCGTCGGTGGTCAAGTGCGAGTACTGCGACTCGACGTACCTGAACTCGGTGCATCTGAACAGCCATCGAGAAGCGGCGCACGCGGGCGGGGGAGCTGGCAACGCGGAGCCGTTCATCTGCGTGGTGTGTTCGTCCACGTTCAGCACGTACTCCAGGCTGACCACGCACAAGCTGACGCACGGAATCAACATGGAGTCCAGCTGCAGCGCGCCCGTCCAGCAGCAGCAGAACCAGCAACCCGACCAGGACAATCCGACGCAGCCCGAGTGGCAGGACGAATCGACGTCAGACCGGTTCGAAATACCGCAGTTTTTCTCCTGCGAATATTGCTCCAAGATGTGCTTGCACTACACGTACTTTTGCCTGCACCGTCGCCTCAAACACCCGCCCGGAGTGCAGACGCACAGGTGTGACAGGTGCTCGGTGGACTTTAAAACGTCCTGGAGACTGTCGTACCACAGAAAAACCGTGCACGGGCAACCGGCGGACGACGAAAAACCGGCCGAGAAGTTCAACTGCACCATATGCTCCCGACAGTTCGTCAAGATCGGCGCGCTCAACTTGCACAAGACCCGAACGCACATCGACGTGGTCGGCGACGTGTGCAAGTACCTGTGCCATCTTTGCGGCAAGTTTTTCAGCTCCGAATTCTCACTCAGGACACACGTCAAGACGCACGAATTCGGCGTCGGCGGCCTACTTGCACCGGTAGAGATGACGGTACCCAGTGGCTGTACCGGCGGCGACGACGACCACATCCATCGTGGCTGCTCCGAACCCGCCGCGATCGCACCGCCGCCGCAGACGGTGCAAGTTCGGCCGAATCACCAGCGCCGCACGTACCGGAAACCGACGGCCACGGCTGTCCGTTTGGGGACGACTGTCCAGCAATCGTGTCCGTACTGCACTCATACGACCGACGACGAGGCGGCGTTCATCGAGCACGTAAACGGTCACATCAGGTACTGCAAGCCCGTATTGCCGGCGGGCACCGTTTGCGAGTTATGCGACGCGAGTTTCGATGACGCTACGCATCTTAAGCACCATCTGGACAACCACGTGAACGGGAACCAAGCTATCCTGTGCCAGGCGTGCTACTCGCCGTTCCTGTCGTCGGCCGCGCACGACGCGCACGTGGCCGCGGAATGTTCGACTGCCACGATGCTGATCAACAACGCACCCGTCCGTACCATCTCGCCCGAAGTGAAGTTCGTCAACCCATCCATCTCCCCGCCCGACGTCAAGTTTGTCGCCCCGTCCGGGGCCCCGCATACCGACGCCCGTCCCCTGATCGTCGACTGTTCAGAGATATTCGGCAACAAGGGCATCGCCGACCAGAAATCGTCACCGCAGAAATCGGACGAGTCGCCGAGCACGCCAAACGCCGACGACAACAAATCACAGGAGTTGTCCGTGCTCGACGAGCTCCTGGCCATCATGTCCACGCCGCGTTCGCTGTCCGCCCTGGATTCGATCGACTACCAACCGCCGGACGACATGTCGTTGGACGCGATTTTCAACAGCATCTCAACCGCGGACTGA
- Protein Sequence
- MPINVGLPTKSCSGQPDLRKPRRRRHYPALRRHRTSFDLTNQVIVYFDPDGSGRCEVVGGSGGDEESAREGRKSAGLSADTSRKGRPKGSKNKSPASPSAPSFSGSFNYSCEKRLLTYKFAGPVKCKSCDRTFDGDPVVHCQEHHRSVCPICGRTYRPPLTTHIKSHGTRHVLLTVSCYECYVCKEKFGNAPTMAEHLRTEHRDIATTAKCSLCDDTAAAFATVEAAIDHLVDAHCPRKKFSHPTLYRCRVCLAGFKSQINVLRHACNKIKSPHCVQCGKTFPSKMRYAFHLQFHEHPKWATMHLHCDLCLAEFDDEYQLYDHIRFRHELHDKAVCEVCGRTFKSSMGLNIHRRYHNGSRDFACGSCDKSFLNKSTLREHEISHMDVKPFQCHICGQYLSRASRLRSHVKTHRAAESTDQLCYSCGHCGYVAPNPTAVAEHAGKMHCDDTAHPTPNECYALQLSSVVKCEYCDSTYLNSVHLNSHREAAHAGGGAGNAEPFICVVCSSTFSTYSRLTTHKLTHGINMESSCSAPVQQQQNQQPDQDNPTQPEWQDESTSDRFEIPQFFSCEYCSKMCLHYTYFCLHRRLKHPPGVQTHRCDRCSVDFKTSWRLSYHRKTVHGQPADDEKPAEKFNCTICSRQFVKIGALNLHKTRTHIDVVGDVCKYLCHLCGKFFSSEFSLRTHVKTHEFGVGGLLAPVEMTVPSGCTGGDDDHIHRGCSEPAAIAPPPQTVQVRPNHQRRTYRKPTATAVRLGTTVQQSCPYCTHTTDDEAAFIEHVNGHIRYCKPVLPAGTVCELCDASFDDATHLKHHLDNHVNGNQAILCQACYSPFLSSAAHDAHVAAECSTATMLINNAPVRTISPEVKFVNPSISPPDVKFVAPSGAPHTDARPLIVDCSEIFGNKGIADQKSSPQKSDESPSTPNADDNKSQELSVLDELLAIMSTPRSLSALDSIDYQPPDDMSLDAIFNSISTAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00184822;
- 90% Identity
- -
- 80% Identity
- -