Asol007521.1
Basic Information
- Insect
- Aulacorthum solani
- Gene Symbol
- -
- Assembly
- GCA_008528875.1
- Location
- PVMI01084698.1:11236-14175[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 3 5.8e+02 2.3 0.7 2 10 131 139 130 141 0.91 2 17 0.028 5.4 8.7 0.1 2 23 154 173 153 173 0.87 3 17 0.0018 0.35 12.4 0.1 1 23 185 208 185 208 0.98 4 17 0.2 40 5.9 0.5 1 20 253 272 253 274 0.94 5 17 0.59 1.2e+02 4.5 2.8 3 17 281 295 280 301 0.76 6 17 0.1 20 6.9 0.6 2 23 312 334 311 334 0.94 7 17 1e-05 0.002 19.4 0.4 2 23 341 362 341 362 0.97 8 17 0.0016 0.31 12.6 0.5 1 23 368 390 368 390 0.95 9 17 5.3e-05 0.01 17.2 2.3 1 23 396 418 396 418 0.99 10 17 1.7 3.4e+02 3.0 0.0 1 20 429 448 429 452 0.79 11 17 0.018 3.6 9.2 1.0 2 23 474 496 473 496 0.96 12 17 0.0034 0.67 11.5 1.5 1 23 507 529 507 529 0.97 13 17 0.016 3.1 9.4 2.8 1 23 602 625 602 625 0.97 14 17 0.014 2.8 9.5 0.7 1 23 637 660 637 660 0.94 15 17 0.00016 0.032 15.7 3.7 3 23 672 693 670 693 0.94 16 17 0.29 57 5.4 0.0 2 23 763 784 762 784 0.95 17 17 0.0022 0.43 12.1 0.8 2 23 797 818 796 818 0.95
Sequence Information
- Coding Sequence
- ATGCCGGACAACGTGGGACCTCCGAAATCATATTCCGGACAGCCGAATTTACGGAAACCCCGGAGACGTCGGCACTATCCAACGTTGCGTCGTCACCGGGCATCGTTTGACCTGACAAATCAAGTGATCGTTTACTTCGACCCGGACGGCAGCGGCAGGTGCGAAGTGGTTGGCGGCAGTGGCGCCGCGGGCTacagtggcggcggcggcgacgagtCTGCCCTCGATGGACGAAAGTCCGTCGGACGCACCGTGGACGCAAACCGCAAAGGCAGGCCCAAGGGATCAAAGAACAAGTTTTCGGCATCGGCTTCGTCACCACCGCTTTCCGGCTCGTTCAACTATCGCTGCGAGAAGAGGTTGCTCACCTACAAGTTCGCCGGCCCGGTCAAGTGCAAGTCGTGCGATCGGACGTTCGACGGAGACCCTGTGGTCCACTGTCAAGAGTACCACAGGTCCGTGTGTCCCATATGCGGCCGCACGTACCGGCCACCGCTGACCACGCACATAAAGTCGCACGGCACTCGACACGTGTTGTTGACCGTTTCGTGTTACGAGTGTTACGTGTGCAAGGAGAAGTTCGGCAACGCACCGACCATGGCCGAACACTTGCGAACCGAACACCGAGACGTCGTCGCCGCCGCAAAGTGCTCTCTGTGTGACGACACCACCGCCGCGTTCCCGACCACCGAAGCGGTCATCGACCACCTAGTGGACTCGCACTGTCCGCGCAAGAAGTTCAGCCACCCTACCCTGTATCGGTGCCGGGTGTGTCTGGCAGGATTCAAGAGCCAGATCAACGTGCTGCGACACGCGTGCAACAAGATCAAGTCACCACATTGCGCACACTGCGACAAGACGTTCCCGTCCAAGATGCGGTACGCTTTCCACCTGCAGTTCCACGAGCACCCGAAGTGGGCGACCATGCACTTGCACTGCGACCTATGCCTGGCCGAGTTCGACGACGAGTACCAGCTGTACGATCACATCCGGTTCCGGCACGAGCTGCACGACAAGGCGGTGTGCGAGGTGTGCGGCCGGACGTTCAAGTCGTCCATGGGCCTAAACATCCACCGCCGGTATCACAACGGGTCCCGGGACTTTGCATGCGGGTCGTGCGACAAGTCGTTCCTGAACAAATCCACGCTCCGGGAGCACGAGATCTCGCACATGGACGTTAAGCCGTTCCAATGTCATATATGTGGCCAGTACCTGAGTCGAGCGTCTAGGCTCCGGTCGCACGTCAAGACTCACCGGGCCGCCGAGTCGACCGACCAGCTGTGCTACAGCTGCGGCCAGTGTGGTTACGTGGCACCCAACCCGATCGCGGTCTCCGAGCACGCCGGCAAGATGCACTGCGATGACACTGCACACTCGACGCCGAACGAGTGCTACGCACTGAAACTGTCGTCGGTGGTCAAGTGCGAGTACTGCGACTCGACGTACTTGAACTCGGTGCACCTGAACAGCCACCGGGAAACGGCGCACGCCGGTGGAGGAGCCGAAAACCCCGAGCCGTTCATCTGCGTGGTGTGCTCGTCCACGTTCAGCACGTACTCCAGGCTGACCACGCACAAGCTGACCCACGGTATCAACATGGAGTCCACCTGCAGCGCGACAGTTCAGCTGCAGCAGCAACCCGACCAGAACGATCTGACGCAGCCTGGCTGGCAGGGCGATTCGACGTCAGACCGGTTTGAAATACCACAGTTTTTCTCCTGCGAATACTGCTCCAAGATGTGCTTGCACTACACGTACTTTTGCCTGCACCGGCGGCTCAAACACCCACCCGGAGTGCAGACGCACAGATGTGACGGGTGCTCGATGGATTTTAAAACGTCCTGGAGACTGTCGTACCACAAAAAAACCGTACACGGACAACCAGCGGACGAGAAGCCGGCCGAGAAGTTCAACTGCACCATATGCTCCCGACAGTTCGTCAAGATCGGAGCGCTCAACTTGCACAAGACCCGCACCCACATCGACGTAGTCGGCGACGTGTGCAAGCACTTGTGCCATCTGTGTGGCAAGTTTTTCAGCTCCGAGTTTTCACTCAGGGCACACGTTAATTCGACACACGAATTCGGCATCGGCGGCGTACTTGCACCGGTTCAGATGACGGTACCCGGTGACTGTATCGGTAACGACGACAAACATCGCGACTGCTCCGAACCCGCAGCGATTGCACCGTCACAGCAGACGGTGCAAACCCGGCCGAATCACCAGCGCCGCACTTACCGGAAACCGACGGCCAACGCTATCCGTTTGGCGACGAAAGTAGAGAAATCGTGTCCGTACTGCGCTCAAACGACTGACGACGAGGCGGCGTTCATCGAGCACGTAAACGGTCATATCCGGTACTGCAAGCCCGTGTTGCCGGCGGGCACCGTTTGCGAGTTATGTGACGCGAGTTTTGACGACACTACCCATCTCAAGTACCACCTGGACAACCACGTGAAAGGGAACCAAGCTCTCCTGTGCCAGGCTTGCTACTCGCCGTTCCTGTCTTCGGCCGCGCACGACGCTCATGTGGCCGCGAAATGCTCGACTGCGACGATGCTGGTCAACTGCGTACCCACCTGTACCATCACGTCTAATATAAAGTCCGTCAATCCGTTCGCCAACCCACCCGACGTCAAGTTTGTAGGCTCGTCCGCCAACCCACCCGACGTCAAGTTTATCGGCCCGTCCGCCGCTCCGCAGTCCGACGCCCGTCCGCTGATCGTCGACTGTTCGGAAATATTCGGCAACAAGGGCATCGCCGACAATAAATCATTACCGCAGAAATCGGTCGAGTCGCCGGATGTGTCCGTGCTCGATGATCTCATGTCCATTATGTCCACGTCACGCTCGTTGTCCTCCCCGGATTCGTTCGACTACCGACCACCGGACGACATTTCGTTGGACGCGATTTTCAACAGCATCTCCACCGAggactga
- Protein Sequence
- MPDNVGPPKSYSGQPNLRKPRRRRHYPTLRRHRASFDLTNQVIVYFDPDGSGRCEVVGGSGAAGYSGGGGDESALDGRKSVGRTVDANRKGRPKGSKNKFSASASSPPLSGSFNYRCEKRLLTYKFAGPVKCKSCDRTFDGDPVVHCQEYHRSVCPICGRTYRPPLTTHIKSHGTRHVLLTVSCYECYVCKEKFGNAPTMAEHLRTEHRDVVAAAKCSLCDDTTAAFPTTEAVIDHLVDSHCPRKKFSHPTLYRCRVCLAGFKSQINVLRHACNKIKSPHCAHCDKTFPSKMRYAFHLQFHEHPKWATMHLHCDLCLAEFDDEYQLYDHIRFRHELHDKAVCEVCGRTFKSSMGLNIHRRYHNGSRDFACGSCDKSFLNKSTLREHEISHMDVKPFQCHICGQYLSRASRLRSHVKTHRAAESTDQLCYSCGQCGYVAPNPIAVSEHAGKMHCDDTAHSTPNECYALKLSSVVKCEYCDSTYLNSVHLNSHRETAHAGGGAENPEPFICVVCSSTFSTYSRLTTHKLTHGINMESTCSATVQLQQQPDQNDLTQPGWQGDSTSDRFEIPQFFSCEYCSKMCLHYTYFCLHRRLKHPPGVQTHRCDGCSMDFKTSWRLSYHKKTVHGQPADEKPAEKFNCTICSRQFVKIGALNLHKTRTHIDVVGDVCKHLCHLCGKFFSSEFSLRAHVNSTHEFGIGGVLAPVQMTVPGDCIGNDDKHRDCSEPAAIAPSQQTVQTRPNHQRRTYRKPTANAIRLATKVEKSCPYCAQTTDDEAAFIEHVNGHIRYCKPVLPAGTVCELCDASFDDTTHLKYHLDNHVKGNQALLCQACYSPFLSSAAHDAHVAAKCSTATMLVNCVPTCTITSNIKSVNPFANPPDVKFVGSSANPPDVKFIGPSAAPQSDARPLIVDCSEIFGNKGIADNKSLPQKSVESPDVSVLDDLMSIMSTSRSLSSPDSFDYRPPDDISLDAIFNSISTED
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01032407;
- 90% Identity
- -
- 80% Identity
- -