Mvit026145.1
Basic Information
- Insect
- Mythimna vitellina
- Gene Symbol
- -
- Assembly
- GCA_949316375.1
- Location
- OX438713.1:5573816-5576917[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.0059 0.54 11.6 3.6 1 23 52 75 52 75 0.97 2 18 0.044 4 8.8 0.1 2 23 102 124 101 124 0.96 3 18 0.00093 0.085 14.1 1.4 2 23 147 168 146 168 0.97 4 18 0.0056 0.51 11.6 0.2 1 23 172 194 172 194 0.95 5 18 0.21 19 6.7 2.7 1 23 199 222 199 222 0.97 6 18 3.3 3e+02 2.9 1.2 2 21 228 247 227 250 0.75 7 18 0.0023 0.21 12.9 0.3 2 23 259 281 258 281 0.96 8 18 1.9e-05 0.0017 19.4 1.1 1 23 287 309 287 309 0.98 9 18 0.29 26 6.3 0.4 1 23 381 404 381 404 0.91 10 18 0.45 41 5.6 0.2 2 23 431 453 430 453 0.93 11 18 0.0019 0.17 13.1 2.0 2 23 476 497 475 497 0.96 12 18 3.4 3.1e+02 2.9 0.4 1 14 501 514 501 520 0.89 13 18 0.018 1.6 10.1 3.9 1 23 528 551 528 551 0.96 14 18 0.2 18 6.8 0.9 2 21 559 578 558 581 0.81 15 18 8.8e-05 0.008 17.3 1.3 2 23 589 611 588 611 0.96 16 18 0.00015 0.014 16.6 0.6 1 23 617 639 617 639 0.98 17 18 6.8e-06 0.00062 20.8 2.8 1 23 645 667 645 667 0.99 18 18 0.00014 0.013 16.7 4.3 1 23 673 696 673 696 0.97
Sequence Information
- Coding Sequence
- ATGTCTCAATCAGAAGAAACTGctgaagaaggtggtaaaaTTAGGAAAAAGAGTCAAAAACTAAACGAGGAAGAATTGTTTAAACAACGTTATAATATTAGAGAAATTCTTCTATGTAGCAATGCATCGCCGATTCGTAAGTACGATCTTGGATATGTGTGCTGTTTCTGTGAGAAACAGTACCCTCATGCCAAAGAACTAAAGACACATACTATCACAGAACACGATGACAGTGATAAACTTGACTTCATGAAAGGACAGCGCATGTTGCATTTTTTAGTTAAACTAGACATAACTGCACTAAAGTGTACTTTGTGCGACACAGACGTAGATTCTGTAGAAGACCTCCTCCAACACTTGAGAAACGACCATGAAAAGCCAATGTTCACGGATATAAAGAATTATATCATACCATTCAAGTTCAACAACTCTGAACTAAAGTGCACATTTTGCCCCCGAATATTCAACAGATTTAAAGTTCTGCAAGAGCACATGTACACACACTATAGAAATTTTGTTTGTGACGTATGCGACAATGGATTTGTAAACGAGAAAATGCTTAACACACACAGTGACAGCCATAAAGTAGGAGTTTTTAAATGCGGACATTGTCTCGAAGAATTTGAAACTCccagaaaaaagaaataccacGAAAAAACTGTTCATTTGTTAGCTTTAAACAAATGTGGGTATTGTGACGAAAAGTTTATGTGGTACCGTCAAAAATGTGCTCACATGGCAGAGGTGCATGGCATTGTTATAACTCAACCGAAGGAATGCAAAGCATGCGATAGAATCTTCCCTTCTGATTCCAAACTACAACTTCATGTCAGGAGAGATCACTTGTTAGAACGTAGATTTAAATGTACTGAATGTGATATGGAGTTCTTTACCAAAGAGTCGCTGAATGATCACATGGTCAAACACACAGGGATTAAAATGTTTTCTTGTGTTCAACGTAACGTGAACGCCAAGATTGAGACGGATTGTGACAAAAAAGTGACTCGCAAATGTACCCGAAGAAAAGTCGACCAAGATGTGGACCTTAAAATcaatgaattaataaaacaaagaagcAATATACGTCTTATCTTGCAATGTTCCAACGCGACACCAATACGATGCAGAGGAGGCATCGGATATGCCTGCTGTTTTTGCGCGGATGAGTTCCCTGATCCTacagacttaaaaaaacatACCCTAGAAGGTCACGACgataaaactaaacttaaattCATGGTCGGCAAAATGATGTTTTCATTCCTGGTCAAATTAGACATCACTAATCTTACGTGTAAGATATGCGAAAACAAAATAGATTCTTTAAAACAACTTGAAGATCATTTGATCAATACACATGGTAAAAAGATTTACACTGACATCAAGAGCCACATAATGCCGTTTAAGTTCGACGATGATACACTAAGATGCATGTTTTGCCAAAATGTCTTTAATAAATTCAAGAACTTGCAACAACATATGAACGTTCATTGCAGAAATTATATTTGTGAATTTTGTGATGcaggatttataaataaacacatctTAGCTTGCCACGCAGAAGGGCATAAGACGGGTACATTCAAATGCGATGTGTGTTCAAAAGTGTTCGACACACACCGAAAGAAGAAAAGTCACGAAAAATCCGTTCATATCCACGCAAACTTGCTTAGTAAGTGTGGGTATTGTAATGAGAAGTTTACGAATTACAAAAGAAGAGATGACCATATGGTGCAAGCTCACGGAGTACAGATTAAAGCAGTGAAATGCAATGCGTGCGATAAGACGTTCGATCACAAAGGAGCACTAACGATCCACACCAAACGAGATCACCTGATGGAGAGACGGTACAAATGTCCGCAGTGCGATATGAATTTCTTCGGGTCTAATGAATTAAAACTCCACATGGTAAAACATACAGGAGTACGAGAATTTAAATGCACTGTGTGTTTCAAGTCATATGGCCGAAAGAAAACATTGAAAGAACACATGAGAATACATAATGACGATAGAAGGTTTAAGTGTGAACACTGCGGTCAAGCATTTGTGCAGAAATGCAGCTGGAAAGGGcacatgagaaataggcacggCGAACTCATCTGA
- Protein Sequence
- MSQSEETAEEGGKIRKKSQKLNEEELFKQRYNIREILLCSNASPIRKYDLGYVCCFCEKQYPHAKELKTHTITEHDDSDKLDFMKGQRMLHFLVKLDITALKCTLCDTDVDSVEDLLQHLRNDHEKPMFTDIKNYIIPFKFNNSELKCTFCPRIFNRFKVLQEHMYTHYRNFVCDVCDNGFVNEKMLNTHSDSHKVGVFKCGHCLEEFETPRKKKYHEKTVHLLALNKCGYCDEKFMWYRQKCAHMAEVHGIVITQPKECKACDRIFPSDSKLQLHVRRDHLLERRFKCTECDMEFFTKESLNDHMVKHTGIKMFSCVQRNVNAKIETDCDKKVTRKCTRRKVDQDVDLKINELIKQRSNIRLILQCSNATPIRCRGGIGYACCFCADEFPDPTDLKKHTLEGHDDKTKLKFMVGKMMFSFLVKLDITNLTCKICENKIDSLKQLEDHLINTHGKKIYTDIKSHIMPFKFDDDTLRCMFCQNVFNKFKNLQQHMNVHCRNYICEFCDAGFINKHILACHAEGHKTGTFKCDVCSKVFDTHRKKKSHEKSVHIHANLLSKCGYCNEKFTNYKRRDDHMVQAHGVQIKAVKCNACDKTFDHKGALTIHTKRDHLMERRYKCPQCDMNFFGSNELKLHMVKHTGVREFKCTVCFKSYGRKKTLKEHMRIHNDDRRFKCEHCGQAFVQKCSWKGHMRNRHGELI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00124504;
- 90% Identity
- iTF_01230893; iTF_01026623;
- 80% Identity
- -