Basic Information

Insect: Mythimna vitellina
Gene Symbol: -
Assembly: GCA_949316375.1
Location: OX438690.1:8973204-8981777[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.006 0.55 11.5 5.4 1 23 235 258 235 258 0.97

2 12 0.00064 0.058 14.6 1.2 1 23 265 287 265 287 0.97

3 12 9.3e-05 0.0084 17.2 0.3 2 23 294 315 293 315 0.97

4 12 1.3e-06 0.00012 23.1 0.4 1 23 321 343 321 343 0.98

5 12 1.1e-05 0.00096 20.2 0.6 1 23 352 374 352 374 0.96

6 12 3.7e-05 0.0034 18.5 1.4 2 23 381 402 380 402 0.96

7 12 0.00062 0.056 14.6 7.5 1 23 408 430 408 430 0.98

8 12 1.8e-09 1.7e-07 32.0 0.6 1 23 436 458 436 458 0.99

9 12 2.7e-05 0.0025 18.9 1.7 1 23 464 486 464 486 0.98

10 12 1.2e-06 0.00011 23.2 1.5 1 23 492 513 492 513 0.98

11 12 9.8e-05 0.0089 17.2 1.3 1 23 519 541 519 541 0.98

12 12 0.0069 0.63 11.3 2.2 1 23 547 569 547 569 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.006	0.55	11.5	5.4	1	23	235	258	235	258	0.97
2	12	0.00064	0.058	14.6	1.2	1	23	265	287	265	287	0.97
3	12	9.3e-05	0.0084	17.2	0.3	2	23	294	315	293	315	0.97
4	12	1.3e-06	0.00012	23.1	0.4	1	23	321	343	321	343	0.98
5	12	1.1e-05	0.00096	20.2	0.6	1	23	352	374	352	374	0.96
6	12	3.7e-05	0.0034	18.5	1.4	2	23	381	402	380	402	0.96
7	12	0.00062	0.056	14.6	7.5	1	23	408	430	408	430	0.98
8	12	1.8e-09	1.7e-07	32.0	0.6	1	23	436	458	436	458	0.99
9	12	2.7e-05	0.0025	18.9	1.7	1	23	464	486	464	486	0.98
10	12	1.2e-06	0.00011	23.2	1.5	1	23	492	513	492	513	0.98
11	12	9.8e-05	0.0089	17.2	1.3	1	23	519	541	519	541	0.98
12	12	0.0069	0.63	11.3	2.2	1	23	547	569	547	569	0.97

Sequence Information

Coding Sequence: ATGGAGTCTGAAATTATCCTAGAAGATAGCATACAAACTGATGAAGTGAAAGCTACCAGAGAAGACTATATTGAAATAGAAATACCGTACAATGTGTACCAATATCTCAGCACAGACCACTGTAATGTTCAAAACATGTGTCGAATATGTCTTGCTACAGATAATGAGATCTTGTATCCTTTATTAGCTaccaaagaaaacaatattttagctCATATGTTAACGACATTAACGACTCTTGAACTGCTTCCAGATGATGGTTTACCATCAAGTATATGTGAGCCTTGTCAGGCTCTACTTGTACAGAGCTACGAGTTCAAGATCAAATGTGAGAAATCGGACTGCATGCTAAAGTCAATACTGAAAGGAGAATTCATTACCAAAGAGGAAATACATGATCATAGCATGAAAATAAAGCAAGAAGAAAAATTAGAAGATTATAGTAATAGAGAAAATAATGACAAtgttcatttaaatattaaaattattgatgTGAAACAAGAGACAGAAATGCTAGAAGATGTTCAATATTTAGAAGATCTCAGTGATATCAGTGATAGTGGTAACCTTTGTGTGGTAACGAAACCAAAGAGTAGAATTAAGTATGTTGACTATGATAGTGATAATAATTTTGAATCTAAAGACCTCCTAAAGCCTTTGattaagaaacataaaaaaaaacatggaaataaagaaaacacatttacctgcaaaacttgttctaagaaattccAAAATGCTAAATCATTCCATGCCCATGTGAAGAGCAAGCATCCAAACAGCCAGCGACTATATTCTTGCAACCAGTGTACGGAGTCATTCAACTCTGACCATGATCTCAAAGTGCATGCATCTATACACAGTAAAGGAAACCCTTGGAAGTGCAACCAATGCCCAAAGGAATTTATTGCCCGCGCAATGCTCCGTCGCCACATCTCACGGCACATGGAGTCCAAGCGCTTCTCATGCGAAGTGTGCAACAAGGCGTTCACCGAACAGTACGCGCTTAGGAGACATGCTCGCGTTCACACAGGCGAGATAATTGAGAAGAAACATGCTTGTACTATGTGTGATAAGAGGTACAGTGACAGCGGTCTCCTGGCCGCGCACATGTCCCGCCACATCGGGCTGCGCCCTTGCGAGTGCAGTATCTGCGGCAAACGTTTTCCATCGAACCGTTTATTGTCTTCACACCGGCTCGTCCATTCTGATCGCAAGCCGTACGCCTGCCAGTACTGCGACAAACGATTCCGCCACGAGTCGACGCGGAACACGCATCACCGTACACACACCGGAGAGAAACCTTACGTGTGCTCAGTTTGCGGCAAGAGTTTCATTCAGAATTCCAACCTTACATTACATATGAGGACACATACAGGCGAGCGACCCTACTCTTGTTCGACATGTGATCGCAAGTTCACATCAGGGTCTACACTCAAGACCCACGAACGGATACACTCAGGGGAGCGACCTTTCAGCTGTGAAATGTGTGggaaaagTTTCTCGCGTAAGAACTTGAGTGCACACATGCGCAAGCACACGGGCGAGCGACCTTACGAGTGCGGCGTCTGCTCCAAAAAGTTTGCCAATGCTACGCGCCTCCGAGATCATCACCGCGTACATACTGGTGAAAAACCATTTGACTGCTCTTTGTGCTCGTTAAAATTTGCTACGAAATCCCAGCAGTTAAAACACTCCAAAACTCATCTAAAAAAGAAGAGAGTACACCAGCAAACTTCAGATAAAGACAGAGACCGAGAGAACCGCGAACTAATCATATTACAGCACGTTGAGCCCGTACCTATAATTACTGATAGGATTATGTTTAATAAAGAACACGGAGAACTAATAACAGTCAATGAAAATATACTCGCCGACGAATCGCCTGAAGAAGAATCCAAAGAACTGACTCTAAACATCGCTCAAGAAATCCCATTAGACGTAACAGGGGAGTTAGTACTACAGGACGATAGCAACATAAAAACAGAACTTTTAGTAGTGGATAATAGCCAAATGAATAACTTCCAAAGTGAGAATATATGCTTGAATACTAACAACGTGAATGTCATCGACGACGGGAATTTCGACGGTGATATGAACCTTGTGACAGTGAACGAGGGCGAAGTTAGCATTTCGACCGCAAACCTCGAAGGAACCACAGTGAAACTATACCAGTTAGACCAAAGTTTAGTGCAAATACACAGCTCCGGCGGACAAGTCACTATTAGTAAGATCACTAGCAAAATGACTGctaacttttaa
Protein Sequence: MESEIILEDSIQTDEVKATREDYIEIEIPYNVYQYLSTDHCNVQNMCRICLATDNEILYPLLATKENNILAHMLTTLTTLELLPDDGLPSSICEPCQALLVQSYEFKIKCEKSDCMLKSILKGEFITKEEIHDHSMKIKQEEKLEDYSNRENNDNVHLNIKIIDVKQETEMLEDVQYLEDLSDISDSGNLCVVTKPKSRIKYVDYDSDNNFESKDLLKPLIKKHKKKHGNKENTFTCKTCSKKFQNAKSFHAHVKSKHPNSQRLYSCNQCTESFNSDHDLKVHASIHSKGNPWKCNQCPKEFIARAMLRRHISRHMESKRFSCEVCNKAFTEQYALRRHARVHTGEIIEKKHACTMCDKRYSDSGLLAAHMSRHIGLRPCECSICGKRFPSNRLLSSHRLVHSDRKPYACQYCDKRFRHESTRNTHHRTHTGEKPYVCSVCGKSFIQNSNLTLHMRTHTGERPYSCSTCDRKFTSGSTLKTHERIHSGERPFSCEMCGKSFSRKNLSAHMRKHTGERPYECGVCSKKFANATRLRDHHRVHTGEKPFDCSLCSLKFATKSQQLKHSKTHLKKKRVHQQTSDKDRDRENRELIILQHVEPVPIITDRIMFNKEHGELITVNENILADESPEEESKELTLNIAQEIPLDVTGELVLQDDSNIKTELLVVDNSQMNNFQSENICLNTNNVNVIDDGNFDGDMNLVTVNEGEVSISTANLEGTTVKLYQLDQSLVQIHSSGGQVTISKITSKMTANF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01030450;
90% Identity: iTF_01027562;
80% Identity: -