Msep015697.2
Basic Information
- Insect
- Mythimna separata
- Gene Symbol
- -
- Assembly
- GCA_030763345.1
- Location
- CM061180.1:7374962-7383918[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.011 1 11.0 4.8 1 23 232 255 232 255 0.97 2 13 0.00049 0.047 15.2 1.5 1 23 262 284 262 284 0.97 3 13 9.6e-05 0.0091 17.4 0.9 2 23 291 312 290 312 0.97 4 13 1.7e-06 0.00016 23.0 0.4 1 23 318 340 318 340 0.98 5 13 0.094 9 8.0 3.3 1 23 349 374 349 374 0.88 6 13 1.3e-05 0.0013 20.1 0.6 1 23 383 405 383 405 0.96 7 13 3e-05 0.0029 19.0 0.9 2 23 412 433 411 433 0.96 8 13 0.00078 0.074 14.6 7.5 1 23 439 461 439 461 0.98 9 13 2.3e-09 2.2e-07 31.9 0.6 1 23 467 489 467 489 0.99 10 13 2e-05 0.0019 19.6 0.9 1 23 495 517 495 517 0.98 11 13 1.5e-06 0.00015 23.1 1.5 1 23 523 544 523 544 0.98 12 13 0.00012 0.012 17.1 1.3 1 23 550 572 550 572 0.98 13 13 0.009 0.86 11.2 2.4 1 23 578 600 578 600 0.97
Sequence Information
- Coding Sequence
- ATGGAGTGTGAAACTATCCTAGAAGACAGCATACAAACTGATCAAGTGAAAGAAACCAGAGAAGATTATATTGAAATAGAAATACCATACAACGTGTACCAATATCTCAGCCAAGATCACTGCAATGTTCAAAATATTTGTCGAATATGTCTCGCTACAGAAAATGAAGTTTTATACCCTTTATTAGCTACCAGAGAAAACAATGTTTTGGCTCATATGTTATCGACATTAACAACTGTTCAACTGCATCCAGAAGATGGTTTACCATCAAGTATATGTGAGCCATGCCAGGCTCTGCTGGTACAGAGCTACGACTTCAAGATCAAGTGTGAGAAGTCTGACTGCACACTCAAGTCAATACTGCAGGGAGAATTCTTTACCAAAGAGGATATACCTGATCATAGCATGCAAATAAAGCAAGaagataattttgaaaattacaataataaagaagataatggcaatatttatttaaataatgaaattatagaTGTAAAACAAGAGACAGAACTACTAGAAGATGTTCAGTATTTAGAAGATCTCAGTGATATCAGCGACAGTGGTAAACTGTGCGTAGTTCCGAAACCAAAGAGTAGAATTAAGTATGTTGACGATGATAATTATgAATCTAAAGGCCATCTAAAGCCTTCgaagaagaaattaaaaaaaaaacatggcaaTAAAGGAAACAAATTTACCTGCAAGATTTGTTCTAAGaaattccaaaatataaaatcattccATGCCCACGTGAAGAGCAAGCATCCAAACAGCCAGCATCGGTATTCTTGCAACCAGTGTACGGAGTCATTCAAGTCGGATCATGATCTCAAAGTGCATGCTTCTATACACAGTAAAGGAAACCCTTGGAAGTGCAATCAATGCACTAAGGAATTTAGTGCCCGCGCAATGCTCCGCCGCCACATATCTCGGCACATGGAGTCCAAGCGCTTCTCGTGCGAAGTCTGCAATAAAGCGTTCACGGAGCAGTACGCGCTCAGGAGACATGCTCGCGTGCACACCGGCGAGATCATCGAGAAGAAACACGCCTGCACTATGTGTGATAAGAGCTGTGCAACGTTCACGGAGCAGTACGCGCTCCGGAGACATGCTCGCGTGCACACCGGCGAGATCATCGAGAAGAAACACGCCTGCACTATGTGTGATAAGAGGTACAGTGACAGCGGCCTCCTAGCCGCGCACATGTCCCGTCACATCGGTCTACGTCCTTGCGAGTGCAGTATCTGCGGCAAACGGTTTCCGTCGAACCGTCTGTTGGCGTCACACCGACTCGTGCACTCTGACCGCAAGCCCTACGCCTGCCAATACTGTGATAAACGTTTCCGGCACGAGTCGACGCGGAACACACATCACCGAACACACACTGGAGAGAAACCCTACGTGTGCTCAGTTTGTGGCAAGAGCTTCATTCAGAATTCCAACCTCACGCTGCATATGAGGACACATACAGGCGAGCGCCCCTACGCATGTTCGACATGTGGCCGCAAGTTCACATCGGGGTCTACACTCAAGACCCACGAGCGCATACACTCTGGGGAACGACCTTTCAGCTGTGAAATGTGTGGCAAAAGTTTCTCGCGTAAGAACCTGAGTGCTCACATGCGCAAGCACACGGGCGAGCGGCCCTACGAGTGCGGCGTCTGCTCCAAGAAGTTTGCCAACGCCACGCGCCTCCGGGATCATCACCGCGTACATACTGGTGAAAAACCATTTGACTGCTCTCTGTGCACGTTAAAATTCGCTACAAAATCCCAGCAGTTAAAACACTCCAAAACTCATCTAAAAAAGAAGAGAGCACACCAGCAGACTTTAGCTCCTGATAACAAGACCAGAACAACAGATAACAGAAGTCAAGACCAGGAGAACCGCGAACTAATCATATTACAGCATGTTGAACCTGTCTTGACTGATAGGCTTATATTTGATAAAGAACATGGGGAACTGATAACTGTTACTGAAAATGTACTCGAAGAGGCACCAAACGATGAATCCAAAGAACTAACTCTAAACATCGCTCAAGAAGTCCCATTGGACGTAACAGGGGAGTTAGTACTTCAAGACGATAGCAACATTAAAACAGAACTCTTAGTAGTGGATAATAGTCAAATGAATAACTTCCAAAGTGATAATATATGCTTGAATACCAACAACGTGGATATCATTGATGATGGGAATTACGACGGTGATATGAATCTGGTGACGGTGAACGAGGGTGGAGTCAGCATTTCGACCGCGAACCTCGAAGGAACCACGGTGAAGCTATACCAGTTAGACCAAAGTTTAGTGCAAATACACAGTTCTGGCGGACAAGTCACTATTAGTAAGATCACTAGCAAAATGACTgctaacttttaa
- Protein Sequence
- MECETILEDSIQTDQVKETREDYIEIEIPYNVYQYLSQDHCNVQNICRICLATENEVLYPLLATRENNVLAHMLSTLTTVQLHPEDGLPSSICEPCQALLVQSYDFKIKCEKSDCTLKSILQGEFFTKEDIPDHSMQIKQEDNFENYNNKEDNGNIYLNNEIIDVKQETELLEDVQYLEDLSDISDSGKLCVVPKPKSRIKYVDDDNYESKGHLKPSKKKLKKKHGNKGNKFTCKICSKKFQNIKSFHAHVKSKHPNSQHRYSCNQCTESFKSDHDLKVHASIHSKGNPWKCNQCTKEFSARAMLRRHISRHMESKRFSCEVCNKAFTEQYALRRHARVHTGEIIEKKHACTMCDKSCATFTEQYALRRHARVHTGEIIEKKHACTMCDKRYSDSGLLAAHMSRHIGLRPCECSICGKRFPSNRLLASHRLVHSDRKPYACQYCDKRFRHESTRNTHHRTHTGEKPYVCSVCGKSFIQNSNLTLHMRTHTGERPYACSTCGRKFTSGSTLKTHERIHSGERPFSCEMCGKSFSRKNLSAHMRKHTGERPYECGVCSKKFANATRLRDHHRVHTGEKPFDCSLCTLKFATKSQQLKHSKTHLKKKRAHQQTLAPDNKTRTTDNRSQDQENRELIILQHVEPVLTDRLIFDKEHGELITVTENVLEEAPNDESKELTLNIAQEVPLDVTGELVLQDDSNIKTELLVVDNSQMNNFQSDNICLNTNNVDIIDDGNYDGDMNLVTVNEGGVSISTANLEGTTVKLYQLDQSLVQIHSSGGQVTISKITSKMTANF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01026581; iTF_01031329; iTF_01029481; iTF_01027562; iTF_00973995; iTF_01230869;
- 90% Identity
- -
- 80% Identity
- -