Mvit027270.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Mythimna vitellina
Gene Symbol
-
Assembly
GCA_949316375.1
Location
OX438714.1:11893935-11926207[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 1.1e-08 8.4e-06 26.1 0.0 4 41 178 214 177 216 0.94

Sequence Information

Coding Sequence
ATGCAATCCGTGaagGTTCCAGATGGCTTAGAAGTCCAGGTGTGCTGGGAATGCCTGGGCCGCGTCAAATCTGCTATCAGCTTCAAGGAGCAAATGCTGAAGTCATACGACTTCCTTATCCAATATTCTAGagagCACACATTCCTGGACTCTCCAAACGATTTCAACCCTCACGCGACTGTCAACATAGAAAGGACTGATGTGGAATGTTATGAATGTACACCAGAGGCTGATGTTGTAGAGGATGAGAAGGACGCAGAGGTGAAGGCTGAGGAGGAGGTCGACGATAAGTATTCATTTGAGGTGGCCGTTAAAGAGGAAACATTCGACGACCAGTACTTCCAGGATATACCGGCAGTTGATAACGATGTCACATCAGATGAAGACGTACAACTTTCGAAGCTGAAAGAGAAAGAAACTGAAAAAGTCAAGAAGAAGAGAAAAAGCGAGCTGAAGAGAGATAGGGACAGAGATAGAATGCCAGCCAACAAAAAGCCGAGAAAGACGAACAGAGGCGTCTATGATATATCACAATTTGAGGCAGCATTTGAACAAATTATACAGGGCGTATCTCTTCGAAAAGCCGCAAAAATGTTCGGCTTAACACATGTCACacttcaaaaatacaaaaagaaacgtCTAGAAAATAATTATCCTGTCAGAATGGGATATGCGAGGAACAGTTTCTTTACTACGGAACAAGAGAATCTCCTAACGATATACCTCAAAAGATATGCAGATATATATCCCAGTCTGTGTGTGAAATTAGTTAGAAAGTACGCCAAAGAATTTAGTGAGAAACTCGGAATGAAAACACCAAAACCTTGGCTAGAAAACAAAATGGCTGGTATAGATTGGTACAAGAACTTTATGTACAGGAATAAGGGTTTAGATGATAAAGTTGCTAGAACAACTGCTAAAGAGAAAGTCAGAGTTTTCTACGACCGGTTATGGAAAACTTTGAGCCAATACAATTTTTCTGCCGAAAATATTCATTGTATTGACGAAATCGGCGTCAACATTGAAGATATTAGAGATAAAGTTACTCTGATAACCACAGAAAATGTGATTTCATTGCACATGTCTCAAGTAGACTCCCCAAAACGCcagaagacaaagaaggaaaaaaacCCCGACAAGAAGAGCAGAAAGCTAAAGAACCTTCCAGAAGAATTGGTAGAATTGTATACTATGAGTAAAGAGGAAATGTGGGGGATCAGGATCGAGGATCTGAACAGTAAGGAGTTCCAGAAGCTGAAGTACAGGTGTGATGATTGCATTATCGCCTTCAATACAGAGAAACTGATGCATGACCATCTGAATGGGAAACATCAACCGaaaagTGAAGACTGCCATCAATGCTCAATATGCCAAGCCTACTTCCTCACTAAAGACAACGTTTCCGCTCACAAAGCACTACATTTGCAAGCGTACAGATGCAGAGAGTGTGGTTTCAACACTACGCTCAAGAGACGCATGTTGAAACACGTCGGTTCCCACGCGCCGAGTGGAGATGCGCATGTGTGTAGCACTTGTAATACCAGCTTTagTACAAAGTCGAAGCTAACCTACCACCGCGGCGTCTGCCGTCAGGAGAGGCCACAATGCGACTGTTGCGGCAAAGTGTTCGCCAACAAAATGACGCTTAAGTACCACTTGAAAATCTTGCCTCAGAATAAAGATGACAAGCCGAAAGAGAAACTGTATATTCCCTGCAAGGGATGCGACAAAGTGTTCCACTCCAAGAAGAGTTATAGAGCACACGTCGTTATCCACGATGGCTTAACTTACCCCTGCCCAATCTGCGGCAAACTGTTCCAATGGAAGCGCAACCTGGCGCGCCACTCGCGCAACCACCGCGAGCGCGAGCTGGGCAGCCTGCACGAGTGCCGCGCCTGCAGCAAGACCTTCGCCAGCCGGGACTGCTACAATAACCACATGAGGCTCAGCAAGAAGCACGTCTCGCAGGATACCTACCAGCACGAATGTAACTACTGCGGTAAGAAATTTGCCACAAAATGGTGCCTGACGGACCACATAGACTGGGATCACTTGAAGAGAATTAAGTACCAATGTAGTTTCTGTTTTAAGgcattcAAAACGGCTAAGATATTGGTGGCTCACGTCAATAATATACATGAGGGGAAGAAGAAAGAAGCCGAGGGCGAACACCTTTGTGAAATATGTGGAAAATCATACAGGACAGTGAAACGCTTGAAGGGCCACGTGTGGGCGATGCACACGAAGCGCTCGAGCAGCAAGATCTACAAGTGCAAGCTGTGTCCCGCCACCTTCATGTGGCAGACGAGCATCTACAAGCACATGAAGATGATGCATGATAACAACAAGAAGACTAAGCCGCCGCGCGCTGTCCAACCAGTGAAGAAAGAAGAGCCCTACCCAGGAATCGAACTGGCGAACCGTATGCAGTACTTCCAACAGAACATTGGCGGCAACTTAAACATAGTCCACATACAGCCTTTAGGGATCACTCAGAATATTGTCTAA
Protein Sequence
MQSVKVPDGLEVQVCWECLGRVKSAISFKEQMLKSYDFLIQYSREHTFLDSPNDFNPHATVNIERTDVECYECTPEADVVEDEKDAEVKAEEEVDDKYSFEVAVKEETFDDQYFQDIPAVDNDVTSDEDVQLSKLKEKETEKVKKKRKSELKRDRDRDRMPANKKPRKTNRGVYDISQFEAAFEQIIQGVSLRKAAKMFGLTHVTLQKYKKKRLENNYPVRMGYARNSFFTTEQENLLTIYLKRYADIYPSLCVKLVRKYAKEFSEKLGMKTPKPWLENKMAGIDWYKNFMYRNKGLDDKVARTTAKEKVRVFYDRLWKTLSQYNFSAENIHCIDEIGVNIEDIRDKVTLITTENVISLHMSQVDSPKRQKTKKEKNPDKKSRKLKNLPEELVELYTMSKEEMWGIRIEDLNSKEFQKLKYRCDDCIIAFNTEKLMHDHLNGKHQPKSEDCHQCSICQAYFLTKDNVSAHKALHLQAYRCRECGFNTTLKRRMLKHVGSHAPSGDAHVCSTCNTSFSTKSKLTYHRGVCRQERPQCDCCGKVFANKMTLKYHLKILPQNKDDKPKEKLYIPCKGCDKVFHSKKSYRAHVVIHDGLTYPCPICGKLFQWKRNLARHSRNHRERELGSLHECRACSKTFASRDCYNNHMRLSKKHVSQDTYQHECNYCGKKFATKWCLTDHIDWDHLKRIKYQCSFCFKAFKTAKILVAHVNNIHEGKKKEAEGEHLCEICGKSYRTVKRLKGHVWAMHTKRSSSKIYKCKLCPATFMWQTSIYKHMKMMHDNNKKTKPPRAVQPVKKEEPYPGIELANRMQYFQQNIGGNLNIVHIQPLGITQNIV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01094841;
90% Identity
iTF_01031444;
80% Identity
iTF_01031444;