Mvit005116.1
Basic Information
- Insect
- Mythimna vitellina
- Gene Symbol
- -
- Assembly
- GCA_949316375.1
- Location
- OX438687.1:27241798-27243612[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-10 1.9e-07 31.4 0.0 3 41 20 58 18 62 0.87
Sequence Information
- Coding Sequence
- ATGCCgcgaatatataaaaagaaactgggTACCCGTGAATACAGAAACTACTCTGAAGCGACGGTTAACGAGGCTGTAAGTCAAGTAGTTGACGGGAAGTTGTCCATCAGAGGTGCATCAGAACAGTATAATATACCTTATGTAACTATTTATAATAGGTATAAAGGAATGCACATGAGAAAACCTGGCGCTCAGACAGTTTTCTCAGAATCTGAGGAAAAAGCTATCTTGAAATCAGCTGCAAAGTGTTCCGATTGGGGGTATCCTCTAACATTGCTGGATTTGAGATTTTTTGCAAAAGCTTTTCTAGATAAACAAGGGCGAGTGGTCACCAAATTCGAAAACAATCTTCCTGGAGTTGAGTGGGCATATTCCCTTTTACGTCGCCATAAAGACGAATACTCTCAAAGGGtatcaacaaatattaaaaaagcaaggGCAAAAGTATCTCAtgatagtataaataaatactttgacaaCCTTACACCAGTTATTAAAGATTTGCCGCCGtccaatatatttaattatgacGAGACGAACATGAGCGACGACCCTGGAAAAAAACAAGGCATTTACAGGCGTGGGGTCAAATATCCAGAGAAGATTATGAATTTTTCCAAAAGTGCCACTACAGTGATGATGTGTGGGTCTGCAGACGGTGTCCTCTTACCACCTTATGTGATCTACAAAAGTGTTCATCTTTATGACACATGGAAAGAAGGGGGACCACAGGGTGCACCGTGTTGTCAGAAGACCTGCTGTTCCAGTGGATCTCGATTTAACAGAACCAATAGTGGCTGGATTGATAGCATTACCTTCCGTGATTGGTTTAGGACCTCTTTCTTGCCGCATGCTAAAGCATTACCAGGTAGAAAAGTTTTGATTGGGGACAACCTGTCCTCACACATAGATGTTGATGTCCTCAATGAATGTGAACAGAATAACATTGATTTTGTCTGTCTGGTTCCAAATTCTACACATCTGTGCCAGCCATTAGATGTGGCATTCTTTAGGCCATTGAAAGGCGCTTGGAGACACGTGTTAACTAACTGGAAACTACAAAATCCTCGATTATCGACTGTTCCAAAAGATACTTTTCCTCGCTTGCTCCAAAAGGCACTAGAAAAGATCTCACCTTTTGCGAATGTCACACAAGGAGTAAAAAGAAATTTACTGAGCGCCTTTAAAGGCACTGGCATATTTCCTTTATCAAGAGATCAAGTGCTGAAAAGACTGCCTGTTGTAGAAAATGGCGACCCTACTAATGAAGCTGAAAGCTGTTTGACCAACTATCTCAAAGAACAGCGATATGGTAGTCAGTCAGCTGCTCCAAGAAGAAGAACACGGTTAAATGTGGAACCAGGCGCTAGCGTGTCAACTGCTGAGGTTAACCCAGACACGGAAGATGCCaatgacatagaaccttctgaTATGGATCAAAGAAACTTGCCCATCGCCACATTTAATGTAGACGAGGCAATCCCTGTAGAGGAGAGCAGTGGGTCTGAAAATCCAGTTTCCGAGGAGCATGAGGAATTAGAAATAGGGAGATTTATCTTGGCGAAATTTTACTCATGTCGAggaaagaaaatttacaaatatgtTTGCCGCATTATCAGCCTAGACCCCTTAGTAGCTGAAGGATTTAAATCGAtgggaaataaaaaagattttagaCTGGTACGCGATGACATATCAGAAATAGAGGAGACTGATATTTTAAGCTATCTGCCGAAGCCCAAACATTTtttcgataaaaataatattgaatgcgttcaatttaattttgatattaatatttttgaacttCCTTAG
- Protein Sequence
- MPRIYKKKLGTREYRNYSEATVNEAVSQVVDGKLSIRGASEQYNIPYVTIYNRYKGMHMRKPGAQTVFSESEEKAILKSAAKCSDWGYPLTLLDLRFFAKAFLDKQGRVVTKFENNLPGVEWAYSLLRRHKDEYSQRVSTNIKKARAKVSHDSINKYFDNLTPVIKDLPPSNIFNYDETNMSDDPGKKQGIYRRGVKYPEKIMNFSKSATTVMMCGSADGVLLPPYVIYKSVHLYDTWKEGGPQGAPCCQKTCCSSGSRFNRTNSGWIDSITFRDWFRTSFLPHAKALPGRKVLIGDNLSSHIDVDVLNECEQNNIDFVCLVPNSTHLCQPLDVAFFRPLKGAWRHVLTNWKLQNPRLSTVPKDTFPRLLQKALEKISPFANVTQGVKRNLLSAFKGTGIFPLSRDQVLKRLPVVENGDPTNEAESCLTNYLKEQRYGSQSAAPRRRTRLNVEPGASVSTAEVNPDTEDANDIEPSDMDQRNLPIATFNVDEAIPVEESSGSENPVSEEHEELEIGRFILAKFYSCRGKKIYKYVCRIISLDPLVAEGFKSMGNKKDFRLVRDDISEIEETDILSYLPKPKHFFDKNNIECVQFNFDINIFELP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01264429; iTF_01264375; iTF_00172729; iTF_01230470; iTF_01230471; iTF_01093961; iTF_01230473; iTF_01031062; iTF_01264378; iTF_00973693; iTF_00973694; iTF_01030138; iTF_00850616; iTF_00850585; iTF_01030137;
- 90% Identity
- iTF_01030137;
- 80% Identity
- -