Mper001650.1
Basic Information
- Insect
- Melanchra persicariae
- Gene Symbol
- -
- Assembly
- GCA_947386135.1
- Location
- OX376643.1:18899810-18901648[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7e-11 3.3e-08 33.5 0.0 3 41 20 58 18 62 0.87
Sequence Information
- Coding Sequence
- atgccgcgaatatataaaaagaaactgggtacccgtgaatacagaaactactctgaagcgacggttaacgaggctttaagtcaagtagttgacgggaagttgtccatcagaggtgcatcagaacagtataatataccttatggaactatttataatagatataaaggaatgcacatgagaaaacctggcgctcagacagttttctcagaatctgaggaaaaagctatcttgaaatcagctgcaaagtgttccgattgggggtatcctctaacattgctggatttgagattttttgcaaaagcttttctagataaacaagggcgagtggtcaccaaattcgaaaacaatcttcctggagttgagtgggcatattctcttttacgtcgccataaagacgaatactctcaaagggtatcaacaaatattaaaaaagcaagggcaaaagtatctcatgatagtataaataaatactttgacaaccttacaccagttattaaagatttgccgccgtccaatatatttaattatgacgagacgaacatgagcgacgaccctggaaaaaaacaaggcatttacaggcgtggggtcaaatatccagagaagattatgaatttttccaaaagtgccactacagtgatgatgtgtgggtctgcagacggtgtcctcttaccaccttatgtgatctacaaaagtgttcatctttatgacacatggaaagaagggggaccacagggtgcaccgtgttgtcagaagacctgctgttccagtggatctcgatttaacagaaccaatagtggctggattgatagcataaccttccgtgattggtttaggacctctttcttgccgcatgctaaagcattaccaggtagaaaagttttgattggggacaacctgtcctcacacatagatgttgatgtcctcaatgaatgtgaacagaataacattgattttgtctgtctggttccaaattctacacatctgtgccagccattagatgtggcattctttaggccattgaaaggcgcttggagacacgtgttaactaactggaaactacaaaatcctcgattgtcgactgttccaaaagatacttttcctCGCTTGCTCCAAAAGGCACTAGAAAAGATAGACTCAGTCCAAGCTAAACCCAACTCACCTTTTGCGAATGTCACACAAGGAGTAAAAAGAAATTTACTGAGCGCCTTTAAAGGCACTGGCATATTTCCTTTATCGAGAGATCAAGTGCTGAAAAGACTGCCTGTTGTAGAAAATGGCGACCCTACTAATGAAGCTGAAAGCTGTTTGACCAACTATCTCAAAGAACAGCGATATGGTAGTCAGTCAGCTGCTCCGAGAAGAAGAACACGGTTAAATGTGGAACCAGGCGCTAGCGTCTCAACTGCTGAGGTTAACCCAGACACGGAAGATGCCAATGACATAGAACCTTCTGATATGGATCAAGAAAACTTGCCCATCGCCACATTTAATGTAGATGAGGCAATCCCTGTAGAGGAGAGCAGTGGGTCTGAAAATCCAGTTTCCGAGGAGCATGAGGAATTAGAAatagggagatttatcttggcgaaattttactcacgtcgaggaaagaaaatttacaaatatgtttgcCGCATTATCAGCCTAGACCCCTTAGTAGCCGAAGGATTTAAATCGATGGGAAATAAAAAAGATTTTAGACTGGTACGCGATGACATATCAGAAATAGAGGAGACTGATATTTTAAGCTATCTGCCGAAGCCCAAACATTTTTTCGATAAAAATAATATTCAATGCGTTCAATTTAATTTTGATATTAATATTTTTGAACTTCCTTAG
- Protein Sequence
- MPRIYKKKLGTREYRNYSEATVNEALSQVVDGKLSIRGASEQYNIPYGTIYNRYKGMHMRKPGAQTVFSESEEKAILKSAAKCSDWGYPLTLLDLRFFAKAFLDKQGRVVTKFENNLPGVEWAYSLLRRHKDEYSQRVSTNIKKARAKVSHDSINKYFDNLTPVIKDLPPSNIFNYDETNMSDDPGKKQGIYRRGVKYPEKIMNFSKSATTVMMCGSADGVLLPPYVIYKSVHLYDTWKEGGPQGAPCCQKTCCSSGSRFNRTNSGWIDSITFRDWFRTSFLPHAKALPGRKVLIGDNLSSHIDVDVLNECEQNNIDFVCLVPNSTHLCQPLDVAFFRPLKGAWRHVLTNWKLQNPRLSTVPKDTFPRLLQKALEKIDSVQAKPNSPFANVTQGVKRNLLSAFKGTGIFPLSRDQVLKRLPVVENGDPTNEAESCLTNYLKEQRYGSQSAAPRRRTRLNVEPGASVSTAEVNPDTEDANDIEPSDMDQENLPIATFNVDEAIPVEESSGSENPVSEEHEELEIGRFILAKFYSRRGKKIYKYVCRIISLDPLVAEGFKSMGNKKDFRLVRDDISEIEETDILSYLPKPKHFFDKNNIQCVQFNFDINIFELP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01031064;
- 90% Identity
- iTF_01030137;
- 80% Identity
- -