Msep025686.1
Basic Information
- Insect
- Mythimna separata
- Gene Symbol
- -
- Assembly
- GCA_030763345.1
- Location
- CM061190.1:3181536-3190970[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.011 1 11.0 0.1 1 23 213 235 213 235 0.97 2 12 0.00027 0.025 16.0 1.5 1 23 241 264 241 264 0.94 3 12 2 1.9e+02 3.8 1.3 1 23 278 300 278 300 0.74 4 12 6.4e-05 0.0061 18.0 3.2 1 23 540 562 540 562 0.98 5 12 0.0082 0.78 11.3 1.6 2 23 568 590 567 590 0.96 6 12 0.00016 0.015 16.7 0.9 2 23 599 620 598 620 0.96 7 12 2.6e-05 0.0025 19.2 1.2 2 23 624 645 623 645 0.97 8 12 0.13 13 7.5 1.0 2 23 659 681 658 681 0.96 9 12 3.2e-05 0.0031 18.9 2.1 1 23 687 709 687 709 0.98 10 12 0.00017 0.016 16.7 1.4 2 23 716 737 716 737 0.98 11 12 0.00018 0.017 16.5 1.4 1 23 743 766 743 766 0.97 12 12 0.0076 0.72 11.5 2.5 1 23 770 793 770 793 0.95
Sequence Information
- Coding Sequence
- ATGGATGAAGAAGATATTTTTCCGGTAATATGTCCCAAGAAAACGTATTCTAAACCGGTTAAAAAGGTTAAAACATCTGAATCGAATGATATGGATAATATCTATAGAAGACCAGGAAAAGTTCCCGATCCTGGTGTCCCTTTGACTACTAAAGTTGCAGTGGAGTATTTGCTCAGTGGGAAGTTAAAGACCAGTGTGTGTCGTTACTGCCTCAAAGTAACGGTAGGGCTGTCCGAACTGGACCAGATAATGCAGATAGCTGGCACAGGAGCCCTGTACAAAGTGACTATAAGGCAAATGATAGCCTGTTTCTACCCTTTCAAGGCTCGCCAAGAAGAAAGCTTTCCAGAAAAAATATGCCAGAAGTGCTTAGACAGAGCTATCAACGCGTACCTCTTCACGCAGCAGTGTGAACAAGCTGAGAGGGCTCTACATAACTGCTTTGATGATATGAATGAGAAATTCAACAAACTAGACCCTATTGATAAAAAGAAACGAAGAGGCAGACAAAAACTAAATCCAAACACTAACACATTGTACGCAGAACACAATTATGTTATGGACTACGCTGAACCAATGCGAAACATCATCAACTTACAAACGGAATCTTTGAGCAACGAACCCGCTTGGAACGAATTTGAATGCAAAAAGTGCTGGCAAGTACTCCCAGACTTAGAATCTTTGCTAAACCATGAGCAAATACATCCAAAATATATGTGGTATAACTGTAGGTTATGCGGTAAATCTTTTGTAAAAATTAACCAGTTAAAGAGACACTTTAATCAAGTCCACGTACGAGGCAAAGGTGTTACGGAAGAAGCAGATAAAACATTCAAATGTAAAGAATGTGGGAATGTAACGGAGAACTATATACAACATCTACAGCATGTAGAAAAGCATAAGTTTAAAAGTATAATGAAGCATTTGATTGAGAAGAAAACGGACCAACTGTGCTTGGTTTGTCTGAAGAAGAGTTCGGACTTAGTGGAGTTAGATAAAATGGTGTGCATACATGGAAGCTGTCCAGAATTGGTTGGAGATAAATCTTTGTATACGGTGCTAGCGTCAACTTTACCCGATATGGAATACCTACACAAATTTATCGGGACAAAAATATGTGATCAGTGCCTTAACCACGCCCTTACTTCGTACATTTTTATAAACCAGTTCATATTTACCAGGGAACGCCTGGATCTATGCGTTAGCCTTATGTTGAAGAACCTTAATGAGATGAGGCCTAGCGCTAATGTGTTTGTACAAGTTTCACCTCCGGTCATCATGCCACCCGCTGGAGAAATGGATGAAACATTACTCTTAGACGAAAACGACTTCATAGATGAGAGTAAGATTAAAATAGACGTTCTTGAAGATGAGTTTAGACTGAAATCTGAGAGCGACAGTGAGAGTGAACCGGAGGGAGTGTTAGATTCTTCTCCACATAAAAGATTACGATCGGAAAATTCTACTCCAGAAATGGAGAATTTAGCTAGTAATGCAACTAAAACTTATATGAAGAGGAAGATGGTTAACGGCTTACAAAGTTCTAGATATTCCGTAGATGTCTGCAGCGAATTCTTAACGttcaacaaaagaaaaaaggttGAAAAAGCCTTCAAATTCACCTGCCCTCTATGCAGCAAACATTTTATATCagaatatttcttaaaaagaCATATTCTTAAACATGTAAACAAGAAAGTATATTGCAATATCTGTCATGATGTCTTCAAATCTAAGTTCTATTTGTATGAGCACACTAAAATGGCTCATTTGTTGAAGGAGAGCTTTTATATGTCTTGTAAGGTGTGTGGTAGGAACTTTACGGATACGGATAAGTTGCAAACGCATGAAGAGAAACATAGAATTAAACCTTGTGAACTGTGCAATAAGGTCTATACTACCCAAGCACACTATGAGAATCACATCCAAAGGCACGCAGTCAAACTCAAGCTTCTAAAAGAGAAACAATCTCAGACATGCAGCTTCTGCGAGAAAGAATGTGCAAACGACAATGAACTCTCTGTACacgttaataaaatacatttacaaataaaaccgTACAGTTGTGATATGTGTGATCGACAGTTCTACACTGAAACtaatttgaaaaatcataaaaagGTGCACAGTATGCCTTCGAAGGAAAAGTGTGAATTTTGTGGCAAAACTTTGAGGAGTAGGAGACAGTTAGTGATACATGTGCGGAAACATATCGGGGCCAAACCGTTCTGCTGCCAAGTTTGTGGGCAAGCCTTCTACTCGGCGTACAAAGTTAGAGAACATATGAGAATTAGCCACGGAGGCAGATTTTGCTGTAGAATATGCAAATCAATTTTCGCAACCAAATATGACCTTAAAGACCACGTGAGTAGAGATCATAATGTCATCTAG
- Protein Sequence
- MDEEDIFPVICPKKTYSKPVKKVKTSESNDMDNIYRRPGKVPDPGVPLTTKVAVEYLLSGKLKTSVCRYCLKVTVGLSELDQIMQIAGTGALYKVTIRQMIACFYPFKARQEESFPEKICQKCLDRAINAYLFTQQCEQAERALHNCFDDMNEKFNKLDPIDKKKRRGRQKLNPNTNTLYAEHNYVMDYAEPMRNIINLQTESLSNEPAWNEFECKKCWQVLPDLESLLNHEQIHPKYMWYNCRLCGKSFVKINQLKRHFNQVHVRGKGVTEEADKTFKCKECGNVTENYIQHLQHVEKHKFKSIMKHLIEKKTDQLCLVCLKKSSDLVELDKMVCIHGSCPELVGDKSLYTVLASTLPDMEYLHKFIGTKICDQCLNHALTSYIFINQFIFTRERLDLCVSLMLKNLNEMRPSANVFVQVSPPVIMPPAGEMDETLLLDENDFIDESKIKIDVLEDEFRLKSESDSESEPEGVLDSSPHKRLRSENSTPEMENLASNATKTYMKRKMVNGLQSSRYSVDVCSEFLTFNKRKKVEKAFKFTCPLCSKHFISEYFLKRHILKHVNKKVYCNICHDVFKSKFYLYEHTKMAHLLKESFYMSCKVCGRNFTDTDKLQTHEEKHRIKPCELCNKVYTTQAHYENHIQRHAVKLKLLKEKQSQTCSFCEKECANDNELSVHVNKIHLQIKPYSCDMCDRQFYTETNLKNHKKVHSMPSKEKCEFCGKTLRSRRQLVIHVRKHIGAKPFCCQVCGQAFYSAYKVREHMRISHGGRFCCRICKSIFATKYDLKDHVSRDHNVI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00907334;
- 90% Identity
- iTF_01030516; iTF_01028643; iTF_01026682; iTF_00888610; iTF_01031404; iTF_01029561;
- 80% Identity
- iTF_01030516;