Basic Information

Insect: Mythimna pallens
Gene Symbol: -
Assembly: GCA_961205895.1
Location: OY540849.1:1594694-1603675[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0095 0.97 11.0 0.1 1 23 213 235 213 235 0.97

2 12 0.0011 0.11 14.0 3.3 1 23 241 264 241 264 0.94

3 12 0.54 55 5.5 1.4 1 23 278 300 278 300 0.92

4 12 5.7e-05 0.0058 18.0 3.2 1 23 541 563 541 563 0.98

5 12 0.0027 0.28 12.7 4.2 2 23 569 591 568 591 0.96

6 12 0.00024 0.025 16.0 0.7 2 23 600 621 599 621 0.94

7 12 2.3e-05 0.0024 19.2 1.2 2 23 625 646 624 646 0.97

8 12 0.058 5.9 8.5 1.4 2 23 660 682 659 682 0.96

9 12 2.8e-05 0.0029 18.9 2.1 1 23 688 710 688 710 0.98

10 12 0.0017 0.18 13.3 2.0 2 23 717 738 717 738 0.98

11 12 0.0001 0.01 17.2 2.1 1 23 744 767 744 767 0.97

12 12 0.0035 0.36 12.3 2.5 1 23 771 794 771 794 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0095	0.97	11.0	0.1	1	23	213	235	213	235	0.97
2	12	0.0011	0.11	14.0	3.3	1	23	241	264	241	264	0.94
3	12	0.54	55	5.5	1.4	1	23	278	300	278	300	0.92
4	12	5.7e-05	0.0058	18.0	3.2	1	23	541	563	541	563	0.98
5	12	0.0027	0.28	12.7	4.2	2	23	569	591	568	591	0.96
6	12	0.00024	0.025	16.0	0.7	2	23	600	621	599	621	0.94
7	12	2.3e-05	0.0024	19.2	1.2	2	23	625	646	624	646	0.97
8	12	0.058	5.9	8.5	1.4	2	23	660	682	659	682	0.96
9	12	2.8e-05	0.0029	18.9	2.1	1	23	688	710	688	710	0.98
10	12	0.0017	0.18	13.3	2.0	2	23	717	738	717	738	0.98
11	12	0.0001	0.01	17.2	2.1	1	23	744	767	744	767	0.97
12	12	0.0035	0.36	12.3	2.5	1	23	771	794	771	794	0.96

Sequence Information

Coding Sequence: ATGGATGAAGATGATATTTTTCCGGTATTATGTCCCAAGAAAACATATTCAAAACAGgctaaaaaagttaaaacatttgACTCTAATGATGTGGAAAAGACCTCTAGAAGAATAGGAAAAATCCCAGATACTGGTGTGCCGTTGACTACTAAAGTTGCAGTGGAGTATTTGCTAAATGGGAAGCTAAAGTCAAGTGTATGTCGTTACTGCCTAAAAGTAACCGTAGGGCTGTCGGAACTGGACCAGATAATGCAGATAGCTGGCACAGGAGTCCTGTATAAAGTGACTATAAGAGAAATGATAGCCTGTTTCTACCCTTTCAAGGCTAGACAAGAAGAAAGCTTCCCAGAAAAAATATGCCAGAAATGCTTAGACAGAGCTATCAACGCATACCTCTTTACACAGCAATGTGAACAAGCTGAAAGAGCTTTACACAACTGCTTTGATGACATAAACGAGAAATTCAACAAACTAGACCCTATTGATAAGAAGAAAAGGAGAGGCAGACAAAAATTAAATCCAAACACCAATACATTGTACGCAGAACATCATAAAGTAATAGACTATGCTGAACCAGTGCGAAGCATCATCAACTTACAAACGGAATCTTTGAGCAACGAACCAGATTGGAATGAATTTGAATGCAAAAAGTGCTGGCAAGTTCTTCCAGACTTAGAATCTTTGCTGAACCATGAGCAAATACATCCAAAATCGATGTGGTACCACTGTAGATTATGTGGTAAATCTTTTGTAAAAATTAACCAGCTCAAGAAACATTTCAATCAAGTCCATGTACGAGGAAAAGGAGTTACCGAAGAGGTAGATAAAACTTTCAAATGTAAAGAATGTGGTAATGTAACGGAAAATTATGTACAACATCTACAGCATATAGAAAAGCATAAGTTTAAGAGTATAATGAAACATTTGATTGAGAAGAAAACAGACCAACTATGCTTGGTTTGTCTTAAGAAGAGTTCGGACTTAGTGGAGTTGGACAAAATGGTGTGCATTCATGGAAGTTGTCCGGAATTGGTCGGAGATAAATCATTGTATACGGTGCTAGCGTCAACTCTACCAGATATGGAATACCTACACAACTTTATCGGGACAAAAATATGTGTTAAGTGCCTTAATCACGCCCTCACTTCATACGTTTTCATACACCAGTTTATGTTTACCAGGGAACGCCTGGATTTATGTGTTAGTCTTATGTTGAAGAACCTTAATGAAATGAATCCTAGCGCTAATGTGTTTGTCCAAGTTTCACCACCGGTCATCATGCCGCCTCCAGGAGAATCggatgaaacattactcctagATGAAAACGATTTTATAGATGAGAGCAACCTCAAAATAGATGTTCTAGAAGATGAGTTTAGAGTGAAGTCTGAGAGCGAGAGCGAGAGTGAACCGGAGGGAAATTTAGATTCTTCCCCACATAAAAGATTACGATCAGAAAATTCTACACCAGAAATGGAGAATTTAGCTAGCAATGCAACTAAAACTTACATGAAGAGAAAGTTGGTCAACGGCATGCAAAATTCGAGATACTCTGTAGATGTCTGCAGCGAATTCTTAACgttcaacaaaagaaaaaaggttGAGAAGACCTCCTTTAAATTTACTTGTCCTCTATGTAGTAAACATTTTATATcagaatatttcttaaaaagacATATTCTGAAACATGTAAACAAGAAAGTTTATTGCAATATCTGTCATTGTGTcttcaaatcaaaattttatttgtatgaacACACTAAAATGGCACATTTGTTGAAAGAGAGTTTTTATATGTCTTGTAAAGTGTGCGGTAGGAATTTTACAGACACGGATAAGTTGCAGACTCATGAAGAGAACCATAGAATCAAGCCTTGTGAACTATGCAATAAGGTCTATACGACCCAAGCTCACTACGAGAATCACATCCAAAGGCACGCCGTGAAACTGAAACTTCTAAAAGAGAAACAATCTCAGACGTGCAGTTTCTGTGAGAAAGAATGTTCAAACGACAATGAACTCTCTGTACACgtcaataaaatacatttacaaataaaaccGTACAGTTGCGACATGTGTGATAGACAATTTTACACTGAAACGAACTTGAAGAATCATAAAAAGGTGCATAGTATGCCTTCTAAGGAAAAGTGTGAATTTTGTAGCAAGACTTTAAGAAGTAGGAGACAGTTAGTTATtcatgttaggaaacatatcgGGGCCAAACCGTTTTGTTGTCAAGTTTGTGGGCAATCGTTCTACTCGGCTTATAAAGTCAGGGAACATATGAGAATAAGTCACGGAGGCCGATTCTGCTGTAGAATATGCAAATCCATTTTCGCAACCAAATATGAACTTAAAGATCACGTGAATAGAGATCATAATATCATTTAG
Protein Sequence: MDEDDIFPVLCPKKTYSKQAKKVKTFDSNDVEKTSRRIGKIPDTGVPLTTKVAVEYLLNGKLKSSVCRYCLKVTVGLSELDQIMQIAGTGVLYKVTIREMIACFYPFKARQEESFPEKICQKCLDRAINAYLFTQQCEQAERALHNCFDDINEKFNKLDPIDKKKRRGRQKLNPNTNTLYAEHHKVIDYAEPVRSIINLQTESLSNEPDWNEFECKKCWQVLPDLESLLNHEQIHPKSMWYHCRLCGKSFVKINQLKKHFNQVHVRGKGVTEEVDKTFKCKECGNVTENYVQHLQHIEKHKFKSIMKHLIEKKTDQLCLVCLKKSSDLVELDKMVCIHGSCPELVGDKSLYTVLASTLPDMEYLHNFIGTKICVKCLNHALTSYVFIHQFMFTRERLDLCVSLMLKNLNEMNPSANVFVQVSPPVIMPPPGESDETLLLDENDFIDESNLKIDVLEDEFRVKSESESESEPEGNLDSSPHKRLRSENSTPEMENLASNATKTYMKRKLVNGMQNSRYSVDVCSEFLTFNKRKKVEKTSFKFTCPLCSKHFISEYFLKRHILKHVNKKVYCNICHCVFKSKFYLYEHTKMAHLLKESFYMSCKVCGRNFTDTDKLQTHEENHRIKPCELCNKVYTTQAHYENHIQRHAVKLKLLKEKQSQTCSFCEKECSNDNELSVHVNKIHLQIKPYSCDMCDRQFYTETNLKNHKKVHSMPSKEKCEFCSKTLRSRRQLVIHVRKHIGAKPFCCQVCGQSFYSAYKVREHMRISHGGRFCCRICKSIFATKYELKDHVNRDHNII

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00907334;
90% Identity: iTF_01030517;
80% Identity: -