Msep017972.1
Basic Information
- Insect
- Mythimna separata
- Gene Symbol
- -
- Assembly
- GCA_030763345.1
- Location
- CM061182.1:17655668-17663005[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0029 0.28 12.8 3.1 1 23 129 151 129 151 0.96 2 12 0.0016 0.15 13.6 0.7 2 23 157 178 156 178 0.96 3 12 3.4e-05 0.0032 18.8 4.1 2 23 219 240 218 240 0.97 4 12 3.3e-05 0.0032 18.9 1.6 1 23 247 269 247 269 0.96 5 12 2e-05 0.0019 19.5 3.2 1 23 275 297 275 297 0.97 6 12 5.1e-06 0.00049 21.4 4.4 1 23 303 325 303 325 0.99 7 12 3e-08 2.9e-06 28.4 1.0 1 23 331 353 331 353 0.95 8 12 2.4e-05 0.0023 19.3 2.4 1 23 359 381 359 381 0.98 9 12 5e-06 0.00048 21.5 0.5 1 23 387 409 387 409 0.98 10 12 0.0036 0.34 12.5 6.4 1 23 415 437 415 437 0.97 11 12 1.8e-06 0.00017 22.9 2.1 1 23 443 465 443 465 0.98 12 12 0.0005 0.047 15.2 0.5 1 20 471 490 471 493 0.94
Sequence Information
- Coding Sequence
- ATGTTCGACATAACTACGTCGTGTCGGACTTGTATGAAGGACAATGTGACTCTGGTAGACTTGTATGAAATAGTTGAAGTTGAGGAAAATTATCTTCAATTAGCTGAGTTACTTGTGCAGTGTACCCCGATTGAGGTCTCCAAGGAGGATGGATTACCACAGAACCTTTGTGATGCTTGTGTCAAGGTGCTACAACTTACATACTCATTCCGTAAGCAGGCGACGAAGGCTCAAGATGAATTCAAAAAACTCCTAGAAAGAAACGTTAAAACAGAGCCTCAGGAAGTAGACCTCAAAACTGAAAACGATCATGACTATTTTGCAAATTATGAAGATTTCAATTTCAATCctgatttttcaaaaactgagaTTGAAGACAAAGAATACACATGCAGTAAATGCAGTAAACAGTTTACTAAAGAGAAGAAATACTTAAAGCATTTAGAAGCACATGAGAATTTATCACTAGAATGTGATATTTGCAAAAAGTTATATTCTAGCCAAACTTTATTAGACAAACACAGAGCGAAGCATGTTAAGAATATGTGTTACGTTGGTGATCAAAGTTATTCAGATGACACACATTTACTGCAACCGAATATGGAGCAGGAGGAAATAGAAGTAAAAACTGAGGAGGCACCATTATGTGTACTGCAATGTCCACATTGTAGACTAACATTCACGAAGCAGAGATCTCTGTCAATGCACATGAGGAAACACAGGAAtgtgaagaaagagttcatttGTGATACTTGTGGCAAGAAGTTTGCCATGAAGCATCTGTTGAAGCGGCACGTGGTGATGCACAGTGAGGTGAAGCCGCACAAGTGTGAGAAGTGTTCCAAGACGTACGCCAGGCGGGACCAGCTCATCTCTCACATGTACTCACATAAGGAACACAAGCCTTATGTCTGTGAATACTGCAAGAAAAGTTTTTCGCAAATGTGTAGTCTAAAAGACCATCTCCGTACCCACACTGGGGAGACCCCATTCCTGTGTTCCGAGTGTGGCAAGGGCTTCTCCAACAACTCCAACCTGAGGCAGCATATGATGAGGCACTCCGGAGTCAAGCCTTATGCATGTAACTTGTGTCCTAAAACATTCTGTACAAAAGGTCAGATGAGGTCACACGTGTCCACTCACACCGGGGAACacccttacaagtgtgaagaatgtggGGCCGCCTTCACGAAGCAGAACTCTTTGAAGAAACACTCCATGATACATCTTGCTATACGACCATTTGCCTGCGACACTTGTAATATGagGTTCACCTGCAAAGACCACTTGAAGCGTCACACTCGGATCCACACGGGCGAGAAGCCGTACAAGTGCAAGTACTGCGAGCGCGCCTTCTCGCAGAGCAACGACCTGGTCAAGCACACGCGCCAGCACATCGGCCAGAACATCTACCAATGCACAATCTGCGGTTCCCGGTTCCGTCTACTATCCGAGCTGAAACAACACTACCCAGTACACTTCGCCAACGGAGAAGAGGGCAATGACCCGCAGATCACTACCAAAGACAACGCGGAGGCTAACACCAACGAGGTCCCAAAACTCCCCATGTTAGAACCAAAACCTTCTGAATTCAACTTTTTAACCTTCAAAAGTGATAAAGGACTGCACCCATCCCTCCTGTTGAAGCCACCAGAGGATAAAGACTTGTCTATGTTAGGTTCGAAGCCTGCTGAAACTGTTGATGGCGAAACTGATCGGTCCTTTTCGGATTCTAATAGGATTGTGATAACTATCAACAGTTGTGATACGAATGGAGTTGTTAATGGTATTACTATTAAACTGCCTCCTAAAGAGAGCTAG
- Protein Sequence
- MFDITTSCRTCMKDNVTLVDLYEIVEVEENYLQLAELLVQCTPIEVSKEDGLPQNLCDACVKVLQLTYSFRKQATKAQDEFKKLLERNVKTEPQEVDLKTENDHDYFANYEDFNFNPDFSKTEIEDKEYTCSKCSKQFTKEKKYLKHLEAHENLSLECDICKKLYSSQTLLDKHRAKHVKNMCYVGDQSYSDDTHLLQPNMEQEEIEVKTEEAPLCVLQCPHCRLTFTKQRSLSMHMRKHRNVKKEFICDTCGKKFAMKHLLKRHVVMHSEVKPHKCEKCSKTYARRDQLISHMYSHKEHKPYVCEYCKKSFSQMCSLKDHLRTHTGETPFLCSECGKGFSNNSNLRQHMMRHSGVKPYACNLCPKTFCTKGQMRSHVSTHTGEHPYKCEECGAAFTKQNSLKKHSMIHLAIRPFACDTCNMRFTCKDHLKRHTRIHTGEKPYKCKYCERAFSQSNDLVKHTRQHIGQNIYQCTICGSRFRLLSELKQHYPVHFANGEEGNDPQITTKDNAEANTNEVPKLPMLEPKPSEFNFLTFKSDKGLHPSLLLKPPEDKDLSMLGSKPAETVDGETDRSFSDSNRIVITINSCDTNGVVNGITIKLPPKES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00623390;
- 90% Identity
- iTF_01029480; iTF_01026584; iTF_01031326; iTF_01027564; iTF_01028536; iTF_00888509;
- 80% Identity
- -