Basic Information

Insect: Mythimna impura
Gene Symbol: -
Assembly: GCA_905147345.1
Location: LR990349.1:24095452-24105324[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0031 0.48 12.7 3.1 1 23 129 151 129 151 0.96

2 12 0.0054 0.86 12.0 1.0 2 23 157 178 156 178 0.96

3 12 0.00018 0.028 16.6 5.3 2 23 220 241 219 241 0.97

4 12 1.4e-05 0.0023 20.1 1.3 1 23 248 270 248 270 0.96

5 12 2.1e-05 0.0034 19.5 3.2 1 23 276 298 276 298 0.97

6 12 4.3e-06 0.00068 21.7 4.7 1 23 304 326 304 326 0.99

7 12 3.2e-08 5e-06 28.4 1.0 1 23 332 354 332 354 0.95

8 12 2.6e-05 0.004 19.3 2.4 1 23 360 382 360 382 0.98

9 12 5.2e-06 0.00082 21.5 0.5 1 23 388 410 388 410 0.98

10 12 0.0038 0.59 12.5 6.4 1 23 416 438 416 438 0.97

11 12 1.9e-06 0.0003 22.8 2.1 1 23 444 466 444 466 0.98

12 12 0.00052 0.081 15.2 0.5 1 20 472 491 472 494 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0031	0.48	12.7	3.1	1	23	129	151	129	151	0.96
2	12	0.0054	0.86	12.0	1.0	2	23	157	178	156	178	0.96
3	12	0.00018	0.028	16.6	5.3	2	23	220	241	219	241	0.97
4	12	1.4e-05	0.0023	20.1	1.3	1	23	248	270	248	270	0.96
5	12	2.1e-05	0.0034	19.5	3.2	1	23	276	298	276	298	0.97
6	12	4.3e-06	0.00068	21.7	4.7	1	23	304	326	304	326	0.99
7	12	3.2e-08	5e-06	28.4	1.0	1	23	332	354	332	354	0.95
8	12	2.6e-05	0.004	19.3	2.4	1	23	360	382	360	382	0.98
9	12	5.2e-06	0.00082	21.5	0.5	1	23	388	410	388	410	0.98
10	12	0.0038	0.59	12.5	6.4	1	23	416	438	416	438	0.97
11	12	1.9e-06	0.0003	22.8	2.1	1	23	444	466	444	466	0.98
12	12	0.00052	0.081	15.2	0.5	1	20	472	491	472	494	0.94

Sequence Information

Coding Sequence: ATGTTCGACATAACTACGTCGTGTCGGACTTGTATGAAGGACAATGTGACTTTGGTAGACTTGTATGAAATAGTGGAAGTTGAGGAAAATTATCTTCAATTAGCTGAGTTACTTGTGCAGTGTACCCTGATTGAGgTCTCTAAGGAAGATGGACTACCACAGAATCTTTGTGATGCCTGTGTCAAGGTGCTACAACTTACATACTCATTCCGTAAGCAGGCGACGAAGGCACAAGATGAGTTTAAAAAACTCCTAGAAAGAAACGTAAAAACAGAGCCTCAGGAAGTAGACCTCAAAACAGAAAACGATCATGACTATTTTGCTAATTATGAAGATTTCAATTTCAACCCtgatttttcaaaaactgaGATTGAAGACAAAGAATATACATGCAGTAAATGTAGTAAACAGTTTACTAAAGAGAAGAAATACTTGAAGCATTTAGAAGCACATGagaatttattattagaatgtGACATTTGCAAAAAGTTGTATTCTAGCCAGACATTTTTAGACAAACACAGAGCTAAGCATGTTAAGAATATGTGTTTTGTTGGTGATCAAAGTTTTTCAAGTGACACACATTTACTGCAACAAAATATTGTGGAGCAAGAGGAAATAGAAGTGAAAACTGAAGAGCCACCATTACGTGTTTTGCAATGTACACATTGTAGACTAACATTTACAAAGCAGCGATCTCTGTCAATGCATATGAGGAAACATAGAAATGTGAAGAAAGAGTTCATTTGTGATACTTGTGGCAAGACTTTTGCCATGAAGCATTTGTTGAAGCGGCACGTGGTGATGCATAGCGAGGTGAAACCACACAAATGTGAGAAGTGTTCCAAGACATATGCTAGGCGGGACCAGCTGATCTCTCACATGTACTCGCATAAGGAACACAAGCCTTATGTCTGTGAATACTGCAAAAAAAGTTTTTCGCAAACGTGTAGTCTTAAGGACCATCTCCGTACCCACACTGGGGAGACCCCATTCCTGTGTTCCGAGTGTGGCAAGGGTTTCTCTAACAATTCCAACCTAAGGCAGCACATGATGAGGCATTCCGGAGTCAAGCCTTATGCATGTAACTTGTGTCCTAAGACATTCTGCACTAAAgGTCAGATGAGGTCACACGTGTCCACACACACCGGGGAACACCCTTACAAATGCGAAGAATGTGGGGCAGCCTTCACGAAGCAGAACTCTCTGAAGAAACACTCCATGATACATCTTGCTATCCGACCATTTGCCTGCGATACTTGTAATATGAGGTTCACCTGCAAAGACCACTTGAAGCGTCACACCAGGATCCACAcgggcgagaaaccttacaagtgCAAGTATTGCGAACGAGCGTTCTCTCAGAGCAATGACTTAGTGAAGCATACGCGCCAACACATCGGTCAGAACATATACCAATGCACAATATGCGGCTCCCGGTTCCGTCTGCTATCAGAGCTGAAACAACACTACCCAGTGCACTTCGCCAACGGCGAGGAGGGCAACGACCCGCAAAGCAGTACCAAAGACAACACAGAGGCTAACACCAACGAGGTTCCAAAACACCTTCCTATATTAGAACCAAAACCTTCTGAATTCAATTTCTTAGCCTTCAAAAGTGATAAAGGTCTTCACCCTTCCCTTCTTTTAAAACCGCCGGAGGTGGATAAAGATCTGCCAATGTTGGGTCTAAAACCTGCAGAAAATGTTGACGACCCCGCGCGGTCGTTAGTGGATTCTAATAGGATTGTCATCACTATCAACAGCTGTGACACGAATGGACTCGTTAATGGCATTACTATTAAACTGCCGCCTAAAGAGAGCTAG
Protein Sequence: MFDITTSCRTCMKDNVTLVDLYEIVEVEENYLQLAELLVQCTLIEVSKEDGLPQNLCDACVKVLQLTYSFRKQATKAQDEFKKLLERNVKTEPQEVDLKTENDHDYFANYEDFNFNPDFSKTEIEDKEYTCSKCSKQFTKEKKYLKHLEAHENLLLECDICKKLYSSQTFLDKHRAKHVKNMCFVGDQSFSSDTHLLQQNIVEQEEIEVKTEEPPLRVLQCTHCRLTFTKQRSLSMHMRKHRNVKKEFICDTCGKTFAMKHLLKRHVVMHSEVKPHKCEKCSKTYARRDQLISHMYSHKEHKPYVCEYCKKSFSQTCSLKDHLRTHTGETPFLCSECGKGFSNNSNLRQHMMRHSGVKPYACNLCPKTFCTKGQMRSHVSTHTGEHPYKCEECGAAFTKQNSLKKHSMIHLAIRPFACDTCNMRFTCKDHLKRHTRIHTGEKPYKCKYCERAFSQSNDLVKHTRQHIGQNIYQCTICGSRFRLLSELKQHYPVHFANGEEGNDPQSSTKDNTEANTNEVPKHLPILEPKPSEFNFLAFKSDKGLHPSLLLKPPEVDKDLPMLGLKPAENVDDPARSLVDSNRIVITINSCDTNGLVNGITIKLPPKES*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00623390;
90% Identity: iTF_01030451;
80% Identity: -