Msep000498.2
Basic Information
- Insect
- Mythimna separata
- Gene Symbol
- JRKL
- Assembly
- GCA_030763345.1
- Location
- CM061167.1:12731101-12733041[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.2e-07 0.0003 21.5 0.1 13 41 27 54 20 56 0.88
Sequence Information
- Coding Sequence
- atGCCGAGAAAACGTGTCAAAGTATCTGCAAAAGGACAGAGTAGCATATCACAGTACATGGAAGCGTATGACGAATTACGAACAGGCATGTCACTTCGAACAGCAGccgaaaaatacaatattaattatgtgTCCCTGCTTCGATATAAAAGAAAACGCGAGGCTAACAATGATGAAAGCGGTGAGTCTACATCAATGGGCTACATAGCACACAACAGAGTTTTCACAGATCCTATGGAGAAAAGCTTGTCAAAATATCTCATGCGATGTGCCGATATTTATTTTGGCCTATCTCCTAAAGAAGTGAGAAAATTGGGTTATGAGTTGGCtgttaaatacaatttaaaaaggcCGAGTACCTGGGATGCAAATGAAATGGCAGGAGAGGATTGGTTTACAGCATTCATGCATAGAAATCCAGAACTTTCCATAAGAGCTGCTCAAGCCACTAGCATGTCCAGGGCAACAAGCTTCAATAGAGTGAACGTGGACGCGTTCTATGATAACCTACAGCAAGTTATGGACAAGAATAACTTCGAGCCCCAAGATATTTATAATGTCGACGAAACGGGTGTTACCACCGTTCAAAAACCAGATAAAGTGGTGACTAGACGTGGTACTCGCCAAGTTGGATCTATAACTTCAGCCGAACGAGGCACTCTCGTAACAGTGGCTTTCGCTGCAAATGCGTTGGGAAACTTTGTTCCAcctttatttgttttcccgCGTGTTCGATATCAGGATCATTTTATAAGGGATGGACCAATAGGTGCAGTGGGAACAGCAAATCCTTCAGGCTGGATGCAAGATgacggttttttattatttttgagacATTTTCAAAAACACACGAATTGTTCTACTGCCCATAAAGTGTTACTTGTGCTAGACAATCATGCATCTCACATTCATATTGATGTTTTAGATTTTTGCAAAGAAAACGGGATCGTATTACTGTCTTTTCCACCACACTGTTCGCATAAGTTACAACCCCTAGATCGATCTGTATATGGACCATTTAAAAAAGCTATTAATAGCCAGTGTGACTCTTGGATGCGAAATCACCCTGGCAAAacaatgagtatttatgatatTCCAAGTATTGTCGCTAATGCTATGCCATTAGCTCTCACTCCAGCCAATATTCAGGCTGGATTTAGAAAAACTGGCATTTGTCCATTCAACCGCAATCTATTCAATGACATTGATTTTGCACCTTCATACGTAACAGACCGGCCTAATCCAAACGATACTAACCATAATACTGTTGCTGTTGGAGTGAATCCTACGCCTGAAGACGACAACCCTACACCGGCAGTAAGTCCCTCTATCTTGCAAGATACTGCTGTTGTTGAAGTGAATCCTATACCCGAGGACGACAACCCTACACCAGCAGTCAGTCCATCTATCTTTCAAGATGAAGTCACTGCGGTTCTCTCATTAAATCCTGCAATATGTGAAAATGTAGATATTGCAAATTATGGAACAGTTTCGCCAAAACCATCGACAAGCTCTGGAATATTTTCACCAGAATCTGTTAGACCTTATCCTAAGGCACCACCTAGATTGACAACAAACAAgggaagaaagaaaagaaaatctaCAATATACACAGATACACCGGAAAAAGAGACAATAAGAAAAGAAACTgaggaaaaagaaagaaagaagaaagcgAAAGGagctaaattaaatttaaataaaaaacgtttgaattctaaatctaaaaatataaataaagctaTGACCAACAAAAAGAAAACCACATCTTCAGATGACGATGAAGATGAAGAGTAttattgtttggtttgtatggaGAGCTATGGCAGTAGCAGACCGGGAGACGATTGGGTACAGTGTTTGGGCTGTCGAATGTGGGCCCACGAAGCTTGTACAGCTGgtgattttacttatttgtgcCATAATTGCGAATCAGACTAA
- Protein Sequence
- MPRKRVKVSAKGQSSISQYMEAYDELRTGMSLRTAAEKYNINYVSLLRYKRKREANNDESGESTSMGYIAHNRVFTDPMEKSLSKYLMRCADIYFGLSPKEVRKLGYELAVKYNLKRPSTWDANEMAGEDWFTAFMHRNPELSIRAAQATSMSRATSFNRVNVDAFYDNLQQVMDKNNFEPQDIYNVDETGVTTVQKPDKVVTRRGTRQVGSITSAERGTLVTVAFAANALGNFVPPLFVFPRVRYQDHFIRDGPIGAVGTANPSGWMQDDGFLLFLRHFQKHTNCSTAHKVLLVLDNHASHIHIDVLDFCKENGIVLLSFPPHCSHKLQPLDRSVYGPFKKAINSQCDSWMRNHPGKTMSIYDIPSIVANAMPLALTPANIQAGFRKTGICPFNRNLFNDIDFAPSYVTDRPNPNDTNHNTVAVGVNPTPEDDNPTPAVSPSILQDTAVVEVNPIPEDDNPTPAVSPSIFQDEVTAVLSLNPAICENVDIANYGTVSPKPSTSSGIFSPESVRPYPKAPPRLTTNKGRKKRKSTIYTDTPEKETIRKETEEKERKKKAKGAKLNLNKKRLNSKSKNINKAMTNKKKTTSSDDDEDEEYYCLVCMESYGSSRPGDDWVQCLGCRMWAHEACTAGDFTYLCHNCESD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00636328; iTF_00636329; iTF_00404795; iTF_00404796; iTF_00932439;
- 90% Identity
- -
- 80% Identity
- -