Lmon006234.1
Basic Information
- Insect
- Lymantria monacha
- Gene Symbol
- JRKL
- Assembly
- GCA_905163515.1
- Location
- LR991084.1:17041281-17043176[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-07 3e-05 24.8 0.1 13 40 27 53 20 56 0.88
Sequence Information
- Coding Sequence
- atGCCGAGAAAACGTGTCAAAGTATCTGCAAAAGGACAGAGTGACATATCACAGTACATGGAAGCGTATGACGAATTACGAACAGGCATGTCACTTCGAAGAGCAGCCGAAAAATACAACATTAATTATGTCTCCCTGCTTCGATATAAAAGAAAACGCAAGGCTAACAATGATGAAAGCGGTGAGTCTACATCAATGGGCTACATAGCACATAACAGGGTTTTCACAGATTCTATGGAGAAAAGCTTGTCAAAATATCTGATGCGATGTGCTGATATTTATTTTGGCCTATGTCCTAAAGAGGTGAGAAAATTAAGTTATGAGTTGGCTGTTAAACACAATTTAAAAAGGCCGATTACCTGGGATGAAAATGAAATGGCAGGGGAGGAttggtttacagcattcatggatAGAAATCCAGAACTTTCAATAAGAGCTGCTCAAGCCACCAGTTTGTCCAGGGCAACAAGCTTCAATAGGGTGAACGTGGACACGTTCTACGATAACCTACAACAAGTTATGGACAAGAATAACTTCGAGCCCCAAGATATTTATAATGTCGACGAAACGGGTGTTACAACCGTTCAAAAACCTGATAAAGTGGTGGCTAGACGTGGTACACGCCAGGTTGGATCTGTAACTTCAGCGGAACGAGGCACTCTCGTAACAGTGACTTTCGCTGCAAATGCGTTGGGAAACGTTGTTCCACCTCTATTTGTTTTCCCACGTGTTCGATATCAGGATCATTTTATAAGGGATGGACCATTAGGTGCAGTGGGAACAGCAAATCCTTCAGGATGGATGCAAGATGAcggttttttgttatttttgaggCATTTTCAAAAACACACGAATTGTTCTACTGCCCATAAAGTATTACTTGTACTAGACAATCATGCATCTCACATTCATATTGATGTTTTGGATTATTGCAAAGAGAACGGGATCGTATTACTGTCTTTTCCACCGCACTGTTCGCATAAGTTACAACCCCTAGATCGATCAGTATATGGACCGTTCAAAAAAGCTATAAATACCCAGTGTGACTCTTGGATGCGAAACCACCAAGGAAAAACTATGAGTATTTATGATATACCTAGTGTTGTGGCTAATGCTATGCCATTAGCTCTCACTCCGGCCAATATTCAGGCTGGATTTAGAAAAACTGGCATTTGTCCATTCAACCGCAATCTATTCAATGAGATTGATTTTTCACCTTCTTATGTAACAGACCGGCCTAATCCAAACGACACTAACCATAATAATGCTGCTGTTGGAGTGAATCCTACGCCTGAAGACGACAACCCTACACCGGCAGTCAGTCCCTCTATCTTGCAAGATACTGCTGCTATTGGAGTAAATCCGACGCCTAAAGACGGCAACCCTACACCAGCAGTCAGTCAGGAAGATGAACTCACTGAAAATCAAGGCATTGCAAATCATGGAACAGTTTCGCCAAAACCATCGACAAGCTCTGGAGTTTTTTCACCAGAATCTGTTAGACCTTATCCTAAGGCACCACCTAGATTGACAAcaaaaaaaggaagaaaaaaaagaaaatctactATATATACAGATACACCGGAAAAAGAGTCAATAAGAAGAGAAACTGAGGAAAAAGAACGAAAAAAGAGAGCGAAAGGAactaaactaaatttaaataaaaaacgttTGAATTcgaaatctaaaaatataaacaaagctACGACCAAAAAGAAAACAGTATCGGATGACGATGAAGATGAAGAGTATTATTGTTTGGTTTGCATGGAGAGCTATGGCACTAGCAGACCGGGAGACGATTGGGTACAGTGTTCAGGCTGTCGAATGTGGGCCCACGAAGCTTGTACGGCTggtgatttaatttatttgtgtcaTAATTGCGAATCAGACTAA
- Protein Sequence
- MPRKRVKVSAKGQSDISQYMEAYDELRTGMSLRRAAEKYNINYVSLLRYKRKRKANNDESGESTSMGYIAHNRVFTDSMEKSLSKYLMRCADIYFGLCPKEVRKLSYELAVKHNLKRPITWDENEMAGEDWFTAFMDRNPELSIRAAQATSLSRATSFNRVNVDTFYDNLQQVMDKNNFEPQDIYNVDETGVTTVQKPDKVVARRGTRQVGSVTSAERGTLVTVTFAANALGNVVPPLFVFPRVRYQDHFIRDGPLGAVGTANPSGWMQDDGFLLFLRHFQKHTNCSTAHKVLLVLDNHASHIHIDVLDYCKENGIVLLSFPPHCSHKLQPLDRSVYGPFKKAINTQCDSWMRNHQGKTMSIYDIPSVVANAMPLALTPANIQAGFRKTGICPFNRNLFNEIDFSPSYVTDRPNPNDTNHNNAAVGVNPTPEDDNPTPAVSPSILQDTAAIGVNPTPKDGNPTPAVSQEDELTENQGIANHGTVSPKPSTSSGVFSPESVRPYPKAPPRLTTKKGRKKRKSTIYTDTPEKESIRRETEEKERKKRAKGTKLNLNKKRLNSKSKNINKATTKKKTVSDDDEDEEYYCLVCMESYGTSRPGDDWVQCSGCRMWAHEACTAGDLIYLCHNCESD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01030154;
- 90% Identity
- -
- 80% Identity
- -