Basic Information

Insect: Mythimna separata
Gene Symbol: clz9
Assembly: GCA_030763345.1
Location: CM061167.1:20194455-20196923[+]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 4.4e-08 4.2e-05 24.2 0.1 4 40 7 42 4 46 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	4.4e-08	4.2e-05	24.2	0.1	4	40	7	42	4	46	0.88

Sequence Information

Coding Sequence: ATGACTGACAAACAGAAGGCCATAATAAACGCCATGGAGGCAGTTAGAAAAGGAGCCTCAATATCAGCTGCAGCTAGGCAACACAATGTTCCACGGTCAACCTTGGACGATAAAATACGCGGCCGCTCTTCAATTCAATGTTCTAAAGGACCTGCTACAATTTTatcaaaagaagaagaagagcatTTAAGGAGATGGTTAATTTTTATGGCGGATAGTGGATTTCCTGTAACTAAGGCGCAGTTGTTAGATAGCGTAAgtatacttattaaaaaattaaagcgaGAAAACCCTTTTAAAAATGGCAGACCAGGTCGTCACTGGTTTGAAGCCTTCATAAAGCGGCACCCTGAAGTAGGCCAGCGAGTGGCACAAAATCTGACGCAAACCCGTGCTTTAGTCCAGGAAAGCAGTTTAAGAGCGTGGTTTAAAGAAGTGGAAGACTATTTTATCATGGCACACCTTGAAGAAGCAATTCAAGATCCACGAAGGATATTTAACTGTGATGAAAGCGCTTTCTTTTTGTCACCAACAAATAACAGAGTTTTAGCAAAACGAGGTGCCAAAAATGTTTATAACATTATTCCCAGTAGTGAAAAAGAGTGCGTGACAGTCTTAGTCACGGCAAATGCAGCAGGTGAATTGGCACCTCCAATGGTGTTGTTTAAACTGAAATCAATaccatttaaaatttcaaaaactgCACCAAAAGACTGGGGCTTAGGATTCACGCCAAAAGGTTGGATGACAGGAGAATCATTTTATGAGTACATGACGAATGTCTTCTATCCTTGGATAGAAAAAACAGATATTAAATTTCCAATCTTGTTTTTCTTAGATGGCCATTGCTCACATACAACCTTGCCACTAAGCAATTTCTGTCGGGATAAAAACATCCAACTCATTGCATTATACCCCAATGCGACTCATTTAATACAACCGATGGATGTGGGTGTTTTTCGGCCACTTAAGATGCTGTGGAAGAAAGAAGTATATGAGTGGCGAAATGAGAACCACTTTGTTAAACTTCGCAAAGAACATTTTTGCCCGCTTCTACATAAATCACTAATGCAATTGGACCCTATCTCGATAAAAAATGGATTTCGCAAATGTGGCTTGTCACCATTTGATGCAAACAATGTAGATTATTCCAAGTGTGTAACAAGCCGCCCCAAGAAACGAGCCAAAGCAGATAATGACAGCCAAATACAACCAGATACCGCtgggaattttttaaatttttttgaatCTCAGATAAGTTCTGAAAACCTCAAAGCTTTGTATAGCAATGAAGGTCCAATTTGGAACGGAGATAAGTCCTTAGAAGGACTATTCTATGTCTGGAGGCAaatgaaattacaaaataatttaccaTCAAGCCTGCCGGCTCAAGAAACTTCACAACAAGAAATTCATAACTTCACAGGTCTGACTGATATCTTGGCTGAGTCCAAGAATCCTGAAAATGCAGGAAAAATAGAGATGTATGAAAATGTCGACGGGACGCTCATGAAAATTTTCGACGTGGAAGTTCCAACTAATGAGGCTTCACTTGCAAACATAGTCAAAGAAGACTTATTTTGCCCTGAAACTGAGACACGAAAAACACCTCATTTATCTGGTCAAGTGATTCGGACAATAGGTTCGAACCCCATATACATCACTTCTCTCAAAAATATTACGACAAATGCTGGAATAACATCAACGCCTATATCTTTTCTTAATGCAGACACGATGTCAAATCTTTCTGATACAGATATTTCATCACAGCCATCATTACTTGCGACCACAAACCCAATTGCCGAATTAGTACCGACACAAACACAATTATGGTCAACTATGACACAAACATCATTTGGTAGCAAAGAACCAATACTTTCAGAGGAAGTCAATGCGACAACCTTAATACCTGATGAAACAACTCTTGATTGCACACAGATCAATATCAACATATCAGAAAATGTGAAGACACCGCCACATACACCCATTGCACAATCATTACCAGACGATGACAATCGCAATcaacaaaaaactaaatattatgGAGATTTAGTTGTACCGACACCATTTAAGGACGCTTTATTTTGGCCACAAACTCCTAGTATCATTACAAAGACTAAAGTTAAACAACCTAGCGTTATAACATGTGATAGATGGCAAATCTTTGCTCAGAATAAGATAGAAGCCAAGACAAAAAAAGAGGAGAATAAAGCTAAAGCTAAAgacaaaagaaataagaaacttGAGCGAGGATTGGATAACAAGAAACTTAAGAAGAAAGCAAGAGATACTGGGGCATCTGACATCGCAAATGAAGATTGGTTTTGTCGGTTATGCCAAAGAAGCACGAAAATGGATATGATACAATGTGTGACTTGTAAGACCTGGTATCATACAATTTGCGCCGAAGTTTCGCCAAATGAAATAACGTTTACTtgtatttattgtaatgtatCGTTTGATGAATAA
Protein Sequence: MTDKQKAIINAMEAVRKGASISAAARQHNVPRSTLDDKIRGRSSIQCSKGPATILSKEEEEHLRRWLIFMADSGFPVTKAQLLDSVSILIKKLKRENPFKNGRPGRHWFEAFIKRHPEVGQRVAQNLTQTRALVQESSLRAWFKEVEDYFIMAHLEEAIQDPRRIFNCDESAFFLSPTNNRVLAKRGAKNVYNIIPSSEKECVTVLVTANAAGELAPPMVLFKLKSIPFKISKTAPKDWGLGFTPKGWMTGESFYEYMTNVFYPWIEKTDIKFPILFFLDGHCSHTTLPLSNFCRDKNIQLIALYPNATHLIQPMDVGVFRPLKMLWKKEVYEWRNENHFVKLRKEHFCPLLHKSLMQLDPISIKNGFRKCGLSPFDANNVDYSKCVTSRPKKRAKADNDSQIQPDTAGNFLNFFESQISSENLKALYSNEGPIWNGDKSLEGLFYVWRQMKLQNNLPSSLPAQETSQQEIHNFTGLTDILAESKNPENAGKIEMYENVDGTLMKIFDVEVPTNEASLANIVKEDLFCPETETRKTPHLSGQVIRTIGSNPIYITSLKNITTNAGITSTPISFLNADTMSNLSDTDISSQPSLLATTNPIAELVPTQTQLWSTMTQTSFGSKEPILSEEVNATTLIPDETTLDCTQININISENVKTPPHTPIAQSLPDDDNRNQQKTKYYGDLVVPTPFKDALFWPQTPSIITKTKVKQPSVITCDRWQIFAQNKIEAKTKKEENKAKAKDKRNKKLERGLDNKKLKKKARDTGASDIANEDWFCRLCQRSTKMDMIQCVTCKTWYHTICAEVSPNEITFTCIYCNVSFDE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01029198;
90% Identity: -
80% Identity: -