Mpal027039.1
Basic Information
- Insect
- Mythimna pallens
- Gene Symbol
- clz9
- Assembly
- GCA_961205895.1
- Location
- OY540847.1:16707866-16710205[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 6.8e-09 3e-06 27.8 0.1 4 34 7 36 4 45 0.89
Sequence Information
- Coding Sequence
- ATGACTGACAAACAGAAGGCCATATTAAAGGCCATGGAGGCAGTTAGAAAAGGAGCCTCAATTTCAGCTGCAGCCAGGCAGTACAATATTCCACGGTCAACGTTGGACGACAAAATATGCGGCCGCTATTCTATTGAATGTTCCAAAGGACCTGCTACAGTTTTatcaaaagaagaagaagatcatTTAAAAAGATGGTTAATTTTTATGGCAGATAGTGGTTTTCCTGTAACTAAGGCGCAATTGTTGGATAGCGTaagtttacttattaaaaaattgaaGCGAGAAAACCCTTTTAAAAATGGCAGACCAGGTCGTCACTGGTTTGAAGCCTTCATAAAGCGGCACCCTGAAGTAGGCCAGCGAGTGTCCCAAAATCTGACGCAAACCCGTGCTTTAGTTCAGGAAAGCAGTTTAAGAGCGTGGTTTAAAGAAGTGGAAGACTATTTTATTATGGCACACCTCGAAGAAACAATTAAAGATCCAAGAAGGATATTTAACTGTGATGAAAGCGCTTTCTTTTTTTCACCAACAAATAACAGAGTTTTAGCAAAACGAGGTGCCAAAAATGTTTATAACATTATTCCCAGTAGTGAAAAAGAGTGCGTGACAGTCTTAGTCACGGCAAATGCAGCAGGTGAATTGGCACCTCCAATGGTGTTGTTTAAACTGAAATCAATaccatttaaaatttcaaaaactgcACCAAAGGACTGGGGCTTAGGATTCACGCCAAAAGGATGGATGACAGGAGAATCATTTTATGAGTACATGACCAATGTCTTCTATCCTTGGATAGAAAAAACTGATATTGAATTTCcaattatgtttttcttagatGGCCATTGCTCACATACGACCCTGCCACTAAGTAATTTCTGTCGGGATAAAAACATCCAACTGATCGCATTATATCCTAATGCGACTCATTTAATACAACCAATGGATGTGGCTGTTTTTCGGCCTCTTAAGATGCTATGGAAGAAAGCAGTTTATGAGTGGCGAAATGACAACCACTTTGCTAAACTTCGCAAAGAACATTTTTGCCCGCTGCTACATAAATCTCTTATGCAATTGGACCCTAACTCGATCAAAAATGGATTTCGCAAATGTGGGTTGTCACCTTTTGATGCAAACAACGTCGATTATTCAAAGTGTGTAACAAGTCATCCCAAGAAACCAGCCAAAGCATATAATGTCAGCCAAATACAACCAGATGCCGTTGGGAATTTTTTTGAATTCTTTGAATCTCAGATAAGTCCTGAAAGCCTCGAAGCTTTTTACAGCAACGAAGGTCCAATTTGGAAAGGGGAAAAATCCTTAGAAGGGCTATTCCACGTCTGGAGGCAAATAAAGTCGCAGAATAATTTACCTTCAAGCCTACCGGCTCAAGGAACTTTATTTGATAACTTCACAGGTCTGACTGACATCTTGGACTCAAATCTGAACTCACACGATTTCAGTGACTTAATGGCTGAAAATGAAAGCCTTACAGGAAAAATAGAGGTGTACGAAAATGTCGACGGGACGCTGATGAAAATTACAGACGTTGAAGTTCCAACTAATGAGGCTTCACTGACAAACTTTGTCAAAGAAGACTTATTTTGCCCTGAAAATGAGACACGAAAAAGACCTCATTTATCAGGACAAGTGATCCGAACAATAGGTTCGAACCCTATATACATCACTTctcacaaaaatattacaacaaatactggaataacatcaacacCTATATCTCTTCTTAATGCAGAAACGATGTCAAATCTTGTTGATACAGATACTTCAATACAGCCATCATTACTTGCTACCACAAACTCAACTGCTGAATTAGTACCGACACAAACACAATTATGGTCAACTATGACACAAACGTCATTTGGTAGCAAAGAACTCGTTCCTATAACGCCGCCAAGTAAAATATCACCAATACTTTCGGAGGAAGTCAATGCGACAACGACAATACCTGATGAAACAACTCCTGATTGCACCCAGATCAATATCAATATATCTGAAAATATGAAGACACCGCCACGTACACTCATTGCACAAGCATTACCAGACGATGACAATCGCAACCAaccaaaaactaaatactatGGTGATCTAGTTGTACCGACACCATTTAAGGACGCTTTATTTTGGCCAGAAACTCCTAGTATCAGTACAAAAACTAAAGTTAAACAACCTAGCGTTATAACATGTGATAGATGGCAAATTTTTGCTCAGAAAAAGTTAGAAGCCAAGACAAAAAAAGAGGAGAATAAAGTTAAagctaaagaaaaaagaaatacaaacttGAGCGAGGATTGGATAACAAGAAACTTAAGAAGAAAGTAA
- Protein Sequence
- MTDKQKAILKAMEAVRKGASISAAARQYNIPRSTLDDKICGRYSIECSKGPATVLSKEEEDHLKRWLIFMADSGFPVTKAQLLDSVSLLIKKLKRENPFKNGRPGRHWFEAFIKRHPEVGQRVSQNLTQTRALVQESSLRAWFKEVEDYFIMAHLEETIKDPRRIFNCDESAFFFSPTNNRVLAKRGAKNVYNIIPSSEKECVTVLVTANAAGELAPPMVLFKLKSIPFKISKTAPKDWGLGFTPKGWMTGESFYEYMTNVFYPWIEKTDIEFPIMFFLDGHCSHTTLPLSNFCRDKNIQLIALYPNATHLIQPMDVAVFRPLKMLWKKAVYEWRNDNHFAKLRKEHFCPLLHKSLMQLDPNSIKNGFRKCGLSPFDANNVDYSKCVTSHPKKPAKAYNVSQIQPDAVGNFFEFFESQISPESLEAFYSNEGPIWKGEKSLEGLFHVWRQIKSQNNLPSSLPAQGTLFDNFTGLTDILDSNLNSHDFSDLMAENESLTGKIEVYENVDGTLMKITDVEVPTNEASLTNFVKEDLFCPENETRKRPHLSGQVIRTIGSNPIYITSHKNITTNTGITSTPISLLNAETMSNLVDTDTSIQPSLLATTNSTAELVPTQTQLWSTMTQTSFGSKELVPITPPSKISPILSEEVNATTTIPDETTPDCTQININISENMKTPPRTLIAQALPDDDNRNQPKTKYYGDLVVPTPFKDALFWPETPSISTKTKVKQPSVITCDRWQIFAQKKLEAKTKKEENKVKAKEKRNTNLSEDWITRNLRRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01029183; iTF_01030150;
- 90% Identity
- iTF_01029183;
- 80% Identity
- -