Msep029704.1
Basic Information
- Insect
- Mythimna separata
- Gene Symbol
- -
- Assembly
- GCA_030763345.1
- Location
- CM061195.1:4262491-4263096[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5e-12 4.7e-09 36.9 0.0 3 43 20 60 18 62 0.89
Sequence Information
- Coding Sequence
- ATGCCGcgaatatataaaaagaaattaggtaCCCGTGAATACAGAAACTACTCTGAAGCGACAGTTAACGAGGCTTTAAGTCAGGTAGTGGACGGCAAGTTGTCCATCAGAGGTGCATCTGAGCAGTATAATATACCTTATGGAACTATTTATAATAGATATAAAGGCACGCACATGAGAAAACCTGGTGCTCAAACAGTTTTCTCAGAATCTGAGGAAAAGGCTATCCTGAAATCAGCTGCAAAGTGTTCCGATTGGGGATATCCTCTAACATTGCTAGATTTGAGATTTTTTGCAAAAGCTTTTCTGGATAAAAAAGGGCGAGTGGTTACTAAGTTTGAAAATAATCTGCCTGGAGTTGAGTGGGCATATTCCCTTTTACGTCGCCATAAAGACGAATACTCTCAAAGGGTGTCATCGAATATTAAAAAAGCGAGGGCAAAAGTATCTCATGAcagtataaataaacattttgacaaCCTTACACCAGTTATTAAAGATTTGCCACCAtccaatatatttaattatgacGAGACGAACATGAGCGACGACCCGGGAAAAAAACAAGGCATTTACAGGCGGTCAAATATCCAGAGAAAATTATGA
- Protein Sequence
- MPRIYKKKLGTREYRNYSEATVNEALSQVVDGKLSIRGASEQYNIPYGTIYNRYKGTHMRKPGAQTVFSESEEKAILKSAAKCSDWGYPLTLLDLRFFAKAFLDKKGRVVTKFENNLPGVEWAYSLLRRHKDEYSQRVSSNIKKARAKVSHDSINKHFDNLTPVIKDLPPSNIFNYDETNMSDDPGKKQGIYRRSNIQRKL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00356095;
- 90% Identity
- iTF_01093003;
- 80% Identity
- -